View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11441_high_4 (Length: 352)

Name: NF11441_high_4
Description: NF11441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11441_high_4
NF11441_high_4
[»] chr1 (4 HSPs)
chr1 (9-231)||(34914921-34915143)
chr1 (14-138)||(40662994-40663116)
chr1 (37-110)||(47899231-47899304)
chr1 (9-57)||(16556509-16556557)
[»] chr3 (4 HSPs)
chr3 (9-157)||(31708247-31708393)
chr3 (9-108)||(31012996-31013095)
chr3 (29-115)||(41298423-41298509)
chr3 (14-84)||(31492769-31492838)
[»] chr5 (3 HSPs)
chr5 (9-138)||(15368321-15368450)
chr5 (19-108)||(2937600-2937689)
chr5 (37-83)||(9818737-9818783)
[»] chr6 (5 HSPs)
chr6 (86-154)||(46360-46429)
chr6 (88-146)||(11598528-11598586)
chr6 (37-83)||(765422-765468)
chr6 (37-83)||(4910911-4910957)
chr6 (29-115)||(10669491-10669577)
[»] chr4 (2 HSPs)
chr4 (9-60)||(52965862-52965913)
chr4 (16-61)||(45011899-45011944)
[»] chr2 (2 HSPs)
chr2 (16-153)||(17281340-17281479)
chr2 (29-61)||(43501150-43501182)
[»] chr8 (1 HSPs)
chr8 (9-83)||(13384662-13384736)
[»] chr7 (1 HSPs)
chr7 (28-93)||(1442566-1442631)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 34915143 - 34914921
Alignment:
Q  9 tgagatgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgattt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34915143 tgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaagaatagcttcaactagaatttcttttagtcctcaaaattgattt 34915044  T
Q  109 ctcaaaatcatgtcaaacataattttatagttagaattgtttttggcacaaagtgaaaccaaacactctattaaacttgttaataggaagatgagagact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34915043 ctcaaaatcatgtcaaacataattttatagttagaattgtttttggcacaaagtgaaaccaaacactctattaaacttgttaataggaagatgagagact 34914944  T
Q  209 ttttaagcaagtaattgtgatga 231  Q
    ||| |||||||||||||||||||    
T  34914943 tttgaagcaagtaattgtgatga 34914921  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 40662994 - 40663116
Alignment:
Q  14 tgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgatttctcaa 113  Q
    ||||||||||| | ||||||||  ||||||||| |||||||||||||| || | |||||| || |||||||  ||||||||   ||||||||||||||||    
T  40662994 tgaattataaatttgtgtgtta--atcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctataaaattgatttctcaa 40663091  T
Q  114 aatcatgtcaaacataattttatag 138  Q
    ||  |||||||| ||||||||||||    
T  40663092 aaaaatgtcaaatataattttatag 40663116  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 47899304 - 47899231
Alignment:
Q  37 aatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgatttct 110  Q
    |||||| |||| ||| |||| |||| || | ||||||| | |||||||  ||||||||||||||||||||||||    
T  47899304 aatcaaatctaaaataaaaaactacaaatagtagcttctagtagaattgtttttagtcctcaaaattgatttct 47899231  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 16556557 - 16556509
Alignment:
Q  9 tgagatgaattataaaatggtgtgttagaatcaattctagaatcaaaag 57  Q
    |||| |||||||| || | |||||| |||||||||||||||||||||||    
T  16556557 tgagttgaattatgaatttgtgtgtcagaatcaattctagaatcaaaag 16556509  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 31708247 - 31708393
Alignment:
Q  9 tgagatgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgattt 108  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||||||||| || | ||||||| | || |||| |||||||||||| ||||||||||    
T  31708247 tgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaatagtagcttcgagtataattgcttttagtcctcgaaattgattt 31708346  T
Q  109 ctcaaaatcatgtcaaacataattttatagttagaattgtttttggcac 157  Q
     ||||||  ||| ||||||||| |||||||||||| ||| |||||||||    
T  31708347 atcaaaa-aatgccaaacataa-tttatagttagagttgcttttggcac 31708393  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 31013095 - 31012996
Alignment:
Q  9 tgagatgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgattt 108  Q
    |||| |||||| |||| | |||||||||||||||||||||| ||||| ||||| || | ||| ||||| ||||||| |||||||||| ||||||||||||    
T  31013095 tgagttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaaatagtaggttcaagtagaattgcttttagtccccaaaattgattt 31012996  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 41298509 - 41298423
Alignment:
Q  29 tgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgatttctcaaaa 115  Q
    |||| |||||||||||||||||| |||| |||| || | ||||||||  ||||||| |||||||| | ||||||| |||||||||||    
T  41298509 tgtgctagaatcaattctagaataaaaaactacaaatagtagcttcatttagaattacttttagttcgcaaaattaatttctcaaaa 41298423  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 31492838 - 31492769
Alignment:
Q  14 tgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatt 84  Q
    ||||||||||| | |||||||| ||||||||||||||||||||||||| || | | ||||||| |||||||    
T  31492838 tgaattataaatttgtgtgtta-aatcaattctagaatcaaaagctacaaatagttgcttcaaatagaatt 31492769  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 15368450 - 15368321
Alignment:
Q  9 tgagatgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgattt 108  Q
    |||| ||||||||||| | |||||||||||||||||||| ||||||||| ||| |  | ||||||||| ||||||| |||||||| | ||||||||||||    
T  15368450 tgagttgaattataaatttgtgtgttagaatcaattctataatcaaaagttacaactagtagcttcaagtagaattgcttttagttcccaaaattgattt 15368351  T
Q  109 ctcaaaatcatgtcaaacataattttatag 138  Q
    ||| | |  ||| || ||||||||||||||    
T  15368350 ctcgataaaatgccatacataattttatag 15368321  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 2937600 - 2937689
Alignment:
Q  19 tataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgattt 108  Q
    |||||| | |||||||| ||||||||||||||||||| ||||| || | |||||| || |||||||||||||||| | ||||||||||||    
T  2937600 tataaatttgtgtgttataatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattt 2937689  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 9818783 - 9818737
Alignment:
Q  37 aatcaattctagaatcaaaagctacgaagaatagcttcaactagaat 83  Q
    ||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  9818783 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 9818737  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 46360 - 46429
Alignment:
Q  86 cttttagtcctcaaaattgatttctcaaaatcatgtcaaacataattttat--agttagaattgtttttgg 154  Q
    |||||||||| |||||||||||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  46360 cttttagtccccaaaattgatttctcaaaa-aatgtcaaacgtaattttatggagttagaattgtttttgg 46429  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 11598528 - 11598586
Alignment:
Q  88 tttagtcctcaaaattgatttctcaaaatcatgtcaaacataattttatagttagaatt 146  Q
    |||||||| |||||||||||||||||||  |||||| |||||| |||| ||||||||||    
T  11598528 tttagtccccaaaattgatttctcaaaaaaatgtcagacataaatttagagttagaatt 11598586  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 765422 - 765468
Alignment:
Q  37 aatcaattctagaatcaaaagctacgaagaatagcttcaactagaat 83  Q
    ||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  765422 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 765468  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 4910957 - 4910911
Alignment:
Q  37 aatcaattctagaatcaaaagctacgaagaatagcttcaactagaat 83  Q
    ||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  4910957 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 4910911  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 10669491 - 10669577
Alignment:
Q  29 tgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaattgatttctcaaaa 115  Q
    ||||||||||||||||| ||||| |||| |||| || | || |||||| |||| ||  ||||||||  |||||||||| ||||||||    
T  10669491 tgtgttagaatcaattccagaataaaaaactacaaatagtaccttcaagtagatttatttttagtctccaaaattgatctctcaaaa 10669577  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 52965862 - 52965913
Alignment:
Q  9 tgagatgaattataaaatggtgtgttagaatcaattctagaatcaaaagcta 60  Q
    |||| ||||||||||| |  |||||||||||||||| |||||||||||||||    
T  52965862 tgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagcta 52965913  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 45011944 - 45011899
Alignment:
Q  16 aattataaaatggtgtgttagaatcaattctagaatcaaaagctac 61  Q
    ||||||||| | |||||| | |||||||||||||||||||||||||    
T  45011944 aattataaatttgtgtgtgaaaatcaattctagaatcaaaagctac 45011899  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 17281479 - 17281340
Alignment:
Q  16 aattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagtcctcaaaa-ttgatttctcaaa 114  Q
    ||||||||| | |||| ||| |||||||| || |||  ||||||||  | | ||||||||| || ||||  ||| ||||||||||| ||||||||||| |    
T  17281479 aattataaatttgtgtattaaaatcaattttaaaattgaaagctacagatagtagcttcaagtataattgttttaagtcctcaaaaattgatttctcata 17281380  T
Q  115 atcatgtcaaacataatttt-atagttagaattgtttttg 153  Q
    |  |||  |||||||||||| | |||||||||||||||||    
T  17281379 aaaatgctaaacataatttttagagttagaattgtttttg 17281340  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 43501182 - 43501150
Alignment:
Q  29 tgtgttagaatcaattctagaatcaaaagctac 61  Q
    ||||||||||||||||||| |||||||||||||    
T  43501182 tgtgttagaatcaattctaaaatcaaaagctac 43501150  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 13384662 - 13384736
Alignment:
Q  9 tgagatgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaat 83  Q
    |||| |||| |||||| | |||||| | ||||||||||||||||||||||||| ||   ||||||||| ||||||    
T  13384662 tgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaat 13384736  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 1442631 - 1442566
Alignment:
Q  28 gtgtgttagaatcaattctagaatcaaaagctacgaagaatagcttcaactagaatttcttttagt 93  Q
    |||| |||||||||||| |||||||||||||||   | |||| |||||| ||||||| ||||||||    
T  1442631 gtgttttagaatcaattatagaatcaaaagctatacataataacttcaagtagaattgcttttagt 1442566  T

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