View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11441_low_1 (Length: 924)
Name: NF11441_low_1
Description: NF11441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11441_low_1 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0197 (2 HSPs) |
| | |
|
| [»] scaffold0936 (1 HSPs) |
| | |
|
| [»] scaffold1396 (1 HSPs) |
| | |
|
| [»] scaffold0658 (1 HSPs) |
| | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 812; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 9 - 910
Target Start/End: Original strand, 24646716 - 24647619
Alignment:
| Q |
9 |
agcagagagagacaggtttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctataga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24646716 |
agcagagagagacaggtttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctataga |
24646815 |
T |
|
| Q |
109 |
agaataactgattagtaagtcacatagactgactataaacttttgtaacaatgtgcaagaannnnnnnaataatgaaattcaatgtgatcaataataaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24646816 |
agaataactgattagtaagtcacatagactgactataaacttttgtaacaatgtgcaagaatttttttaataatgaaattcaatgtgatcaataataaca |
24646915 |
T |
|
| Q |
209 |
tttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24646916 |
tttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatac |
24647015 |
T |
|
| Q |
309 |
ttgaatctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647016 |
ttgaatctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacag |
24647115 |
T |
|
| Q |
409 |
ttacaagtggagtcaaacatgagagtaattacaaaataattaccaacacaactactaacataattacataaagtcaaacattctatcac--cccgcagtc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24647116 |
ttacaagtggagtcaaacatgagagtaattacaaaataattaccaacatagctactaacataattacataaagtcaaacattctatcacaccccgcagtt |
24647215 |
T |
|
| Q |
507 |
gaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttgtgaagatgtcagcaatctggtgatgagaagg |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24647216 |
gaagcgggaggtttacggacgcttagaatggtctgaaaatcatcaaaaagaactcaaagtaggcctttgtgaagatgtcagcaatctggtgacgagaagg |
24647315 |
T |
|
| Q |
607 |
aacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatggattaaca |
706 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24647316 |
aacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgctgatgttgcaatggattaaca |
24647415 |
T |
|
| Q |
707 |
acaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcag |
806 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647416 |
gcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcag |
24647515 |
T |
|
| Q |
807 |
aaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttgtcaccaagaaa |
906 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24647516 |
aaaccatattagcaacacctctgtatccggcttctgcactggattgagaaagtgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaa |
24647615 |
T |
|
| Q |
907 |
caca |
910 |
Q |
| |
|
|||| |
|
|
| T |
24647616 |
caca |
24647619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 12 - 908
Target Start/End: Original strand, 24637784 - 24638688
Alignment:
| Q |
12 |
agagagagacaggtttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctatagaaga |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
24637784 |
agagagagacagttttatctttacagaaggaaagatttttaaacatgagccaattacttggcttcatcctaaagtccatgagcttagaatctatagaaga |
24637883 |
T |
|
| Q |
112 |
ataactgattagtaagtcacatagactgactataaacttttgtaacaat--gtgcaagaannnnnnnaataatgaaattcaatgtgatcaataataacat |
209 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
24637884 |
ataactgattagttagtcacatagactgactataaacttttgtaacaatatgtgcaagaatttttttaataatgaaattcaatgtgatcaataataatat |
24637983 |
T |
|
| Q |
210 |
ttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatact |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24637984 |
ttagataaaataagaaaaccaagcttagagcaagtgcagcagggagcacaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatact |
24638083 |
T |
|
| Q |
310 |
tgaat----ctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatata |
405 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638084 |
tgaattaatctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatata |
24638183 |
T |
|
| Q |
406 |
cagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacacaactactaacataattacataaagtcaaacattctatcac--cccgca |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24638184 |
cagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacataactactaacataattacataaagtcaaacattctatcacaccccgca |
24638283 |
T |
|
| Q |
504 |
gtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttgtgaagatgtcagcaatctggtgatgaga |
603 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
24638284 |
gttgaagcgggaggtttacggacgcttagaatggtctgaaaatcatcaaaatgaactcaaagtaggcctttgtgatgatgtcagcaatctggtgacgaga |
24638383 |
T |
|
| Q |
604 |
aggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatggatta |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
24638384 |
aggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggatta |
24638483 |
T |
|
| Q |
704 |
acaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagatt |
803 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638484 |
acagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagatt |
24638583 |
T |
|
| Q |
804 |
cagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttgtcaccaag |
903 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24638584 |
cagaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaag |
24638683 |
T |
|
| Q |
904 |
aaaca |
908 |
Q |
| |
|
||||| |
|
|
| T |
24638684 |
aaaca |
24638688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 497 - 910
Target Start/End: Original strand, 48099390 - 48099804
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||| |||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
48099390 |
ccccgcagtcgaagcgggaggttcacgaacacttagactggttcgaaaatcatcaaaaagaacacgcggtaggcctttggtgaagatgtcagcaatctgg |
48099489 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
||| ||||||||||||||||||| | |||||| ||||| | |||||||| ||||||||||||| |||||||||||||||||||| || |||||||| | |
|
|
| T |
48099490 |
tgacgagaaggaacatgaaggacgcgtgcctggccacgagctaccttttctcgaacaaagtgaatgtccatctcaatatgtttagtgcgctgatgttgta |
48099589 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
||||||| || |||||| |||| | |||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| || |||||||| |
|
|
| T |
48099590 |
ctggattaccagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtgggaaatgaagttccaagagaaggttacgaagcca |
48099689 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||| || ||||||||| | ||| | ||||| ||||||||||| ||||||||||| || |||||||| |
|
|
| T |
48099690 |
acaagattcagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgggttgtcgcttggaagaccaggagatgaggttg |
48099789 |
T |
|
| Q |
896 |
tcaccaagaaacaca |
910 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48099790 |
tcaccaagaaacaca |
48099804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 450 - 910
Target Start/End: Complemental strand, 20620798 - 20620346
Alignment:
| Q |
450 |
accaacacaactactaacataattacataaagtcaaacattctatca---ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaat |
546 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| ||||||| | |||| ||||||| |
|
|
| T |
20620798 |
accaacataattactaacataattacataaagtcaaacattctatcatacctccgaagtcgaagcgggaggttcacgaacgcttaaactggttcgaaaat |
20620699 |
T |
|
| Q |
547 |
catcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctggtgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttc |
645 |
Q |
| |
|
|||||||||||||| | || ||||||| |||||||||||||||||||| ||| ||||||||||||||||||| | ||||| ||| | | ||||||| |
|
|
| T |
20620698 |
tatcaaaaagaactcgaggttggcctttggtgaagatgtcagcaatctgatgacgagaaggaacatgaaggacgcgtgccttgtcacccacggccttttc |
20620599 |
T |
|
| Q |
646 |
cagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatggattaacaacaaggtagatggaattaacattatcacaatacaccaaa |
745 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| || ||||||| || ||| ||||||||| |||||||||| || ||| ||||| |
|
|
| T |
20620598 |
tcaaacaaatagaatgtccatctcaatatgtttagtacgttgatgtttcattggattagcagaaagctagatggaagtaacattatcgcagtactccaaa |
20620499 |
T |
|
| Q |
746 |
gtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcagaaaccatattagcaacacctttgtattcggcttctgcat |
845 |
Q |
| |
|
| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||| || |||||||||| | ||||||| |||||||||| |
|
|
| T |
20620498 |
ggagcctgggaaagtgggtagtgaaactctaagagaagattgcgaagccaacacgactcagaaacca------------cattgtatttagcttctgcat |
20620411 |
T |
|
| Q |
846 |
tggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttgtcaccaagaaacaca |
910 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
20620410 |
tggagcaagaaagcgtgggttgtcgtttgaaagatcatgaaatgaggttgtcaccaagaaacaca |
20620346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 88 - 340
Target Start/End: Original strand, 24716457 - 24716712
Alignment:
| Q |
88 |
catgaacttagaatctatagaagaataactgattagtaagtcacatagactgactataaacttttgtaacaatgtgcaagaannnnnnn----aataatg |
183 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |||| | ||||| |
|
|
| T |
24716457 |
catgagcttagaatctatagaagaataactgattagtaagtcacatagactcactataaacttctgcaacaacgaataagatttttttgttttagtaatg |
24716556 |
T |
|
| Q |
184 |
aaattcaatgtgatcaataataacatttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggaggctctagctg |
283 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||||| |||||| |||||| |||||||| |||| || ||| |||||||||| |||||||| |||||||| |
|
|
| T |
24716557 |
aaattcaatatgatcagtaataacatgtagataaagtaagaataccaacattagagcatttgcaacaaggaacacaagcatgaggtggagg-tctagctg |
24716655 |
T |
|
| Q |
284 |
atgcaaacagtgtaactgagcatacttgaatctgttgcttgcagacttgaattacaa |
340 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
24716656 |
atgcaaacaatgtcactgagcattattgaatctgttccttgcagacttgaattacaa |
24716712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 499 - 747
Target Start/End: Original strand, 29074044 - 29074293
Alignment:
| Q |
499 |
ccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctggtg |
597 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| || |||||||||||||||| |||| | | | || |||||| ||||||| || | ||| || || |
|
|
| T |
29074044 |
ccgcagtcgaagcgggaggtttccagacgcttagactgatccgaaaatcatcaaagagaatgcgaggaagccctttggtgaagatatctgtaatttgatg |
29074143 |
T |
|
| Q |
598 |
atgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaat |
697 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| | || |||||| | ||||||||||| |||||| |||||| || ||||| |||||||| | |
|
|
| T |
29074144 |
tcgagaaggaacatgaagtatgcatgcctgaccacgagctactttttcccgtacaaagtgaatctccatcacaatatacttggtacgctgatgttgtaca |
29074243 |
T |
|
| Q |
698 |
ggattaacaacaaggtagatggaattaacattatcacaatacaccaaagt |
747 |
Q |
| |
|
|||||| || ||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
29074244 |
ggattaccagagaggtagatgacactaacattgtcacaatacaccaaagt |
29074293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 429 - 496
Target Start/End: Complemental strand, 20619773 - 20619706
Alignment:
| Q |
429 |
gagagtaattacaaaataattaccaacacaactactaacataattacataaagtcaaacattctatca |
496 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20619773 |
gagagtaattaaaaaataataaccaacgtaaatactaacataattacataaagtcaaacattctatca |
20619706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 24713235 - 24713341
Alignment:
| Q |
25 |
tttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctatagaagaataactgattagt |
124 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||| ||| ||| |||||| | || |
|
|
| T |
24713235 |
tttatcattatagaaggaaagatctataaa-atgaggcaattacttagcttcatcctaaaagccatgagcttagaatccttaggtgaaaaactgagtggt |
24713333 |
T |
|
| Q |
125 |
aagtcaca |
132 |
Q |
| |
|
|||||||| |
|
|
| T |
24713334 |
aagtcaca |
24713341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 24740722 - 24740847
Alignment:
| Q |
25 |
tttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctatagaagaataactgattagt |
124 |
Q |
| |
|
|||||||||| | |||||||||| | | |||||||||||| || || |||||||| || || |||||| ||||||||||||||| |||| ||| ||| | |
|
|
| T |
24740722 |
tttatctttataaaaggaaagatatattaacatgagccaaatatttcgcttcatcttacaagccatgagcttagaatctatagatgaattactaattggc |
24740821 |
T |
|
| Q |
125 |
aagtcacatagactgactataaactt |
150 |
Q |
| |
|
|||| ||| ||| | ||||||||||| |
|
|
| T |
24740822 |
aagtgacacagattcactataaactt |
24740847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 24691062 - 24691206
Alignment:
| Q |
6 |
agaagcagagagagacaggtttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctat |
105 |
Q |
| |
|
||||| ||| |||||| ||||||||| | ||||||||||||| | || ||||| |||||| || |||| || |||||| | | || |||||||||||| |
|
|
| T |
24691062 |
agaagtagaaagagacttgtttatcttgatagaaggaaagatcaatgaatatgagacaattatttagcttaatactaaaatctacgagcttagaatctat |
24691161 |
T |
|
| Q |
106 |
agaagaataactgattagtaagtcacatagactgactataaactt |
150 |
Q |
| |
|
||||| ||||||||| | |||||||| ||| | ||||||||||| |
|
|
| T |
24691162 |
tgaagagtaactgattcgcaagtcacacagattcactataaactt |
24691206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 24716418 - 24716463
Alignment:
| Q |
16 |
agagacaggtttatctttacagaaggaaagatctttaaacatgagc |
61 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
24716418 |
agagataggtttatctttatagaaggaaaaatctttaaacatgagc |
24716463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 693
Target Start/End: Complemental strand, 34013876 - 34013821
Alignment:
| Q |
638 |
accttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
34013876 |
accttttcgcgaacaaaatgaatatccatctcaatatgttttgttctttgatgttg |
34013821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 24639751 - 24639812
Alignment:
| Q |
24 |
gtttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaa |
85 |
Q |
| |
|
||||||||| | |||||||||||||| | |||||||| |||||| || |||||||| ||||| |
|
|
| T |
24639751 |
gtttatcttgatagaaggaaagatctatgaacatgagacaattatttagcttcatcgtaaaa |
24639812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 497 - 910
Target Start/End: Complemental strand, 44387656 - 44387243
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| || | |||||||| |||| || ||||||||||||||||||| | ||||| ||||| ||||||||| ||||||||| |
|
|
| T |
44387656 |
ccccgcagtcgaagcgggaggttcacaggcgcttagactggttcggaaatcatcaaaaagaactcgaggtaggactttggtgaagatgtgagcaatctga |
44387557 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
44387556 |
tgacgagaaggaacatgaaggacacgtgcctggccacgcacgaccttttcc-gaacaaagtgaatgtccatctcaatatgtttagtacgttgatgctgca |
44387458 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
||||||| || ||||||||||| | ||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
44387457 |
ctggattaccagaaaggtagatggcactaacattatcacaatacaccaaactagtctgggaaagtgggtagtgaagctctaagagaagattgcgaagcca |
44387358 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
||| ||||||||||||| |||||||||||| | || | ||||||||| | ||| |||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
44387357 |
acatgattcagaaaccacattagcaacacccatatacttagcttctgcacttgagcaagaaagtgtgggttgtcgtttggaagaccaagaaatgaggttg |
44387258 |
T |
|
| Q |
896 |
tcaccaagaaacaca |
910 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44387257 |
tcaccaagaaacaca |
44387243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 497 - 910
Target Start/End: Original strand, 9932108 - 9932522
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||| |||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
9932108 |
ccccgcagtcgaagcgggaggttcacgaacacttagactggttcgaaaatcatcaaaaagaacacgcggtaggcctttggtgaagatgtcagcaatctgg |
9932207 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
||| ||||||||||||||||||| | |||||| ||||| | |||||||| ||||||||||||| |||||||||||||||||||| || |||||||| | |
|
|
| T |
9932208 |
tgacgagaaggaacatgaaggacgcgtgcctggccacgagctaccttttctcgaacaaagtgaatgtccatctcaatatgtttagtgcgctgatgttgta |
9932307 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
||||||| || |||||| |||| | |||||||||||||||||||||||||||| || || |||||| | |||| ||||||||||| || |||||||| |
|
|
| T |
9932308 |
ctggattaccagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtgggaaatgaagttccaagagaaggttacgaagcca |
9932407 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||| || ||||||||| | ||| | ||||| ||||||||||| ||||||||||| || |||||||| |
|
|
| T |
9932408 |
acaagattcagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgggttgtcgcttggaagaccaggagatgaggttg |
9932507 |
T |
|
| Q |
896 |
tcaccaagaaacaca |
910 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9932508 |
tcaccaagaaacaca |
9932522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 497 - 906
Target Start/End: Complemental strand, 45030066 - 45029656
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctgg |
595 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| | | | || ||||| |||||||| || |||||||| |
|
|
| T |
45030066 |
ccccacagtcgaagcgggaggttcacggacgctgagactggtccgaaaatcatcaaagagaatgcgaggaagccctttggtgaagatatctgcaatctga |
45029967 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
|| |||| |||||||| ||||| | |||||||||||| | || |||||| | |||||||| || ||||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
45029966 |
tgtcgagatggaacatggaggacgcgtgcctgaccacgagctactttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgttgatgctgca |
45029867 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
|| || || |||||||||| | ||||||| ||||||||||||||||||||||| | || || || | ||||||| | ||||| |||||||| |
|
|
| T |
45029866 |
cagggttgccagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagattacgaagcca |
45029767 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
||| || ||||| || | ||||||||||||| | ||||| ||||| ||| | || |||| || |||||||||| ||||| ||||| | |||||||| |
|
|
| T |
45029766 |
acatgactcagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttg |
45029667 |
T |
|
| Q |
896 |
tcaccaagaaa |
906 |
Q |
| |
|
||||| ||||| |
|
|
| T |
45029666 |
tcaccgagaaa |
45029656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 497 - 906
Target Start/End: Complemental strand, 45034917 - 45034507
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctgg |
595 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| | | | || ||||| |||||||| || |||||||| |
|
|
| T |
45034917 |
ccccacagtcgaagcgggaggttcacggacgctgagactggtccgaaaatcatcaaagagaatgcgaggaagccctttggtgaagatatctgcaatctga |
45034818 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
|| |||| |||||||| ||||| | |||||||||||| | || |||||| | |||||||| || ||||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
45034817 |
tgtcgagatggaacatggaggacgcgtgcctgaccacgagctactttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgttgatgctgca |
45034718 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
|| || | |||||||||| | ||||||| ||||||||||||||||||||||| | || || || | ||||||| | ||||| |||||||| |
|
|
| T |
45034717 |
cagggttgccggataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagattacgaagcca |
45034618 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
||| || ||||| || | ||||||||||||| | ||||| ||||| ||| | || |||| || |||||||||| ||||| ||||| | |||||||| |
|
|
| T |
45034617 |
acatgactcagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttg |
45034518 |
T |
|
| Q |
896 |
tcaccaagaaa |
906 |
Q |
| |
|
||||| ||||| |
|
|
| T |
45034517 |
tcaccgagaaa |
45034507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 498 - 906
Target Start/End: Complemental strand, 24210288 - 24209879
Alignment:
| Q |
498 |
cccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctggt |
596 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| | | || ||||| |||||||| || |||||| | | |
|
|
| T |
24210288 |
cccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaagagaatgcggggaagccctttggtgaagatatctgcaatccgat |
24210189 |
T |
|
| Q |
597 |
gatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaa |
696 |
Q |
| |
|
| |||| |||||||| ||||| | || |||||||| | || |||||| | |||||||| || ||||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
24210188 |
gtcgagatggaacatggaggacgcgtggctgaccacaagctactttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgttgatgctgcac |
24210089 |
T |
|
| Q |
697 |
tggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaa |
796 |
Q |
| |
|
|| || || |||||||||| | ||||||| ||||||||||||||||||||||| | || || || | ||||||| | ||||| ||||||||| |
|
|
| T |
24210088 |
agggttgccagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagattacgaagccaa |
24209989 |
T |
|
| Q |
797 |
caagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttgt |
896 |
Q |
| |
|
|| || ||||| || | ||||||||||||| | ||||| ||||| ||| | || |||| || |||||||||| ||||| ||||| | ||||||||| |
|
|
| T |
24209988 |
catgactcagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgt |
24209889 |
T |
|
| Q |
897 |
caccaagaaa |
906 |
Q |
| |
|
|||| ||||| |
|
|
| T |
24209888 |
caccgagaaa |
24209879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 906
Target Start/End: Original strand, 7324509 - 7324643
Alignment:
| Q |
772 |
ctccaagagaagattgcgaagccaacaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgt |
871 |
Q |
| |
|
|||||| || || ||||| | ||||||||| ||||| || | ||| ||||||||| |||||||||||| ||| | ||| |||| | |||||||| ||| |
|
|
| T |
7324509 |
ctccaaaagtaggttgcgtaaccaacaagactcagatacgacattggcaacacctcggtattcggcttcagcactagagcgagataatgtgggttggcgt |
7324608 |
T |
|
| Q |
872 |
ttggaagaccatgatgtgaggttgtcaccaagaaa |
906 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |
|
|
| T |
7324609 |
ttggaagaccatgagagtagattgtcaccaagaaa |
7324643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 779 - 885
Target Start/End: Complemental strand, 30332361 - 30332255
Alignment:
| Q |
779 |
agaagattgcgaagccaacaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaag |
878 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | |||||||||||| || || ||||||||| | || ||||||| || ||||||||||| | || |
|
|
| T |
30332361 |
agaagatttcgaagccaacaagattctgaaacaacattagcaacaccacgatactccgcttctgcactagaacgagaaagagttggttgtcgtttagcag |
30332262 |
T |
|
| Q |
879 |
accatga |
885 |
Q |
| |
|
||||||| |
|
|
| T |
30332261 |
accatga |
30332255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 693
Target Start/End: Original strand, 7324385 - 7324430
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
7324385 |
gaacgaagtgaatgtccatctcaatgtgtttagtgcgttgatgttg |
7324430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 3e-84; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 497 - 906
Target Start/End: Complemental strand, 23584305 - 23583896
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||| || || | ||||||||||||||||| | | |||| |||||| |||||| | ||||||||||| |
|
|
| T |
23584305 |
cccctcagtcgaagcgggaggttcacggacgtttagactgatctggaaatcatcaaaaagaacacgaggtagacctttggtgaagacgacagcaatctgg |
23584206 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
||| ||||||||||||||||||| | |||||| ||||| | ||||||| | ||||||||||||| ||||||||||||||||||| |||| |||||| | |
|
|
| T |
23584205 |
tgacgagaaggaacatgaaggacgcgtgcctggccacgagcgacctttcctcgaacaaagtgaatgtccatctcaatatgtttagcgcgtt-atgttgta |
23584107 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
||||||| | ||||||||||| | |||||||||||||||||||||| |||||||| || |||||| | |||||||||||||||| ||||||| ||| |
|
|
| T |
23584106 |
ctggattacgagaaaggtagatggcactaacattatcacaatacaccaaggtagcctgagagagtgggaaatgaagctccaagagaaggttgcgaaacca |
23584007 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||| || |||| |||| | || ||||||| |||||||||| ||||||||||| || ||||||| |
|
|
| T |
23584006 |
acaagattcagataccacattagcaacacccctgtactcagcttttgcactagaccgagaaagtgtgggttgtctcttggaagaccaggaaatgaggtta |
23583907 |
T |
|
| Q |
896 |
tcaccaagaaa |
906 |
Q |
| |
|
||||||||||| |
|
|
| T |
23583906 |
tcaccaagaaa |
23583896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 497 - 906
Target Start/End: Original strand, 40270364 - 40270774
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| | | | || |||||| ||||||||||||| ||||| |
|
|
| T |
40270364 |
ccccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaagagaatgcgaggaagtcctttggtgaagatgtcagcgatctga |
40270463 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
|| || |||||||||||||| | ||||||||||| | |||||||||| ||||||| ||||| | |||||||||||||||| | || ||||| |||| |
|
|
| T |
40270464 |
tgtcttgagggaacatgaaggacgcgagcctgaccacgagcgaccttttcccgaacaaaatgaatgttcatctcaatatgtttaatgcgctgatgctgca |
40270563 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
|||||| || || ||||||| | ||||||| ||| ||||||||||||| ||||| || || | | || |||| ||||||||||||| ||| |
|
|
| T |
40270564 |
caggattaccagatagatagatggcactaacattgtcataatacaccaaagtggcctgatgaataggaaaatggagttccagaagaagattgcgaatcca |
40270663 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
||| |||||||| || | ||| ||||||||| | ||||| ||||| ||| | || | || || || || || |||||||||||||| || | |||||| |
|
|
| T |
40270664 |
acacgattcagagacaacatttgcaacacctctatattcagcttcagcactagaacgggagagagttggctgccgtttggaagaccaagaaataaggttg |
40270763 |
T |
|
| Q |
896 |
tcaccaagaaa |
906 |
Q |
| |
|
||||| ||||| |
|
|
| T |
40270764 |
tcacctagaaa |
40270774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 497 - 683
Target Start/End: Complemental strand, 19183682 - 19183495
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||| | | | || ||||| ||||||||||| ||||||||| |
|
|
| T |
19183682 |
ccccgcagtcgaagcgggaggttcacaaacgcttagactggtccgaaaatcatcaaagagaatacgaggaagccctttggtgaagatgtctgcaatctgg |
19183583 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtac |
683 |
Q |
| |
|
|| || |||| ||| || ||||||||||||||||| | || |||||| ||||||| ||||| || |||| ||| ||||| |||| |
|
|
| T |
19183582 |
tgtcttgagggaatatgtagaacacatgcctgaccacgagctactttttcccgaacaaaatgaatgtctatcttaatgtgtttggtac |
19183495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 500 - 695
Target Start/End: Complemental strand, 31343345 - 31343149
Alignment:
| Q |
500 |
cgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctggtga |
598 |
Q |
| |
|
|||||||||||| ||||||| || |||||||| | | ||| |||| |||| |||||||| | | || |||||| |||||||||| |||||||| | |
|
|
| T |
31343345 |
cgcagtcgaagcaggaggttcacagacgcttacactagtctgaaagtcataaaaaagaatatgagggagccctttggtgaagatgtctgcaatctgatat |
31343246 |
T |
|
| Q |
599 |
tgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||| | || |||||| ||||||| ||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31343245 |
ctggagggaacatgaagtacacatgcttgaccacgagctactttttcccgaacaaaatgaatgtccatctcaatatgtttggtacgctgatgttgca |
31343149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 490
Target Start/End: Original strand, 15935270 - 15935331
Alignment:
| Q |
429 |
gagagtaattacaaaataattaccaacacaactactaacataattacataaagtcaaacatt |
490 |
Q |
| |
|
|||||| ||||||||||||| ||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
15935270 |
gagagtgattacaaaataataaccaacataattagtaacataattacataaagtcaaacatt |
15935331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 779 - 885
Target Start/End: Original strand, 32307300 - 32307406
Alignment:
| Q |
779 |
agaagattgcgaagccaacaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaag |
878 |
Q |
| |
|
||||| || ||||||||||||||||||||||| | |||||||||||| || || ||||||||| | || ||||||| || ||||||||||||| || |
|
|
| T |
32307300 |
agaaggtttcgaagccaacaagattcagaaacaacattagcaacaccacgatactccgcttctgcactagaacgagaaagagttggttgtcgtttggcag |
32307399 |
T |
|
| Q |
879 |
accatga |
885 |
Q |
| |
|
||||||| |
|
|
| T |
32307400 |
accatga |
32307406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 693
Target Start/End: Complemental strand, 3378566 - 3378511
Alignment:
| Q |
638 |
accttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
3378566 |
accttttcgcgaacaaaatgaatatccatctcaatatgttttgttctttgatgttg |
3378511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 690
Target Start/End: Original strand, 4193470 - 4193512
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatg |
690 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
4193470 |
gaacaaagtggatatccatctcgatatgtttggtacgttgatg |
4193512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 111; Significance: 2e-55; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 497 - 906
Target Start/End: Complemental strand, 41093 - 40683
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||| |||| | | | || |||||| ||||||| || |||||||| |
|
|
| T |
41093 |
ccccgtagtcgaagcgggaggttcacggacgcttagactggtccgaaagtcatcaaagagaatgcgaggaagccctttggtgaagatatcggcaatctga |
40994 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
|| |||| ||||||||||| || | ||||||||||| | ||||||||| | ||||||||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
40993 |
tgtcgagagggaacatgaagtacgcgtgcctgaccacaggctaccttttcccgtacaaagtgaatgtccatttcaatatgtttggtacgctgatgttgca |
40894 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
|||||| || || || |||| | ||||||| ||||||||||||||||| ||||| | || || | |||||||||| | ||| || |||| ||| |
|
|
| T |
40893 |
caggattaccagagagataaatggcactaacattgtcacaatacaccaaagtggcctgaggaataggaaaatgaagctccaataaaaggttacgaatcca |
40794 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
||| || ||||| || | ||||||||||||| | ||||||||||| ||| |||||||||| || ||||| || | |||||||||||| || | |||||| |
|
|
| T |
40793 |
acatgactcagatacaacattagcaacacctctatattcggcttcagcactggagtgagagagagtgggctgccttttggaagaccaagagataaggttg |
40694 |
T |
|
| Q |
896 |
tcaccaagaaa |
906 |
Q |
| |
|
||||||||||| |
|
|
| T |
40693 |
tcaccaagaaa |
40683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 83; Significance: 8e-39; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 497 - 906
Target Start/End: Original strand, 5642 - 6052
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| |||| | | | || |||||| ||||||| || |||||||| |
|
|
| T |
5642 |
ccccgcagtcgaagcgggaggttcacggacgcttagactggtccaaaaatcatcaaagagaatgcgaggaagccctttgatgaagatatctgcaatctga |
5741 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
|| |||||||||||||||| || | ||||| |||||| | || |||||| | ||||||||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
5742 |
tgtcgagaaggaacatgaagtacgcgtgcctcaccacgagctactttttcccgtacaaagtgaatgtccatttcaatatgcttggtacgttgatgttgca |
5841 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagcca |
795 |
Q |
| |
|
||||| || || |||||| | ||||||| ||||||||||||||||| || || | || ||| | |||| |||| | ||| || | || ||| |
|
|
| T |
5842 |
catgattaccagagagatagatgacactaacattgtcacaatacaccaaagtggcttgaggaatagggaaatgaagttccagtaaaaggttacaaatcca |
5941 |
T |
|
| Q |
796 |
acaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttg |
895 |
Q |
| |
|
||| || ||||| || | ||||||||||||| | ||||||||||| || | || |||| || ||||| || | |||||||||||| || | |||||| |
|
|
| T |
5942 |
acatgactcagatacaacattagcaacacctctatattcggcttcaacactagaccgagagagagtgggctgccttttggaagaccaagagataaggttg |
6041 |
T |
|
| Q |
896 |
tcaccaagaaa |
906 |
Q |
| |
|
||||||||||| |
|
|
| T |
6042 |
tcaccaagaaa |
6052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 8e-36; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 500 - 752
Target Start/End: Complemental strand, 16594939 - 16594686
Alignment:
| Q |
500 |
cgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctggtga |
598 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| | ||||||||||||||||| |||| | | | || |||||| |||||||||| ||||| || || |
|
|
| T |
16594939 |
cgcagtcgaagcgggaggttcacggacacttagactagtccgaaaatcatcaaagagaatgcgaggaagtcctttggtgaagatgtctgcaatttgatgt |
16594840 |
T |
|
| Q |
599 |
tgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatg |
698 |
Q |
| |
|
||| |||||||||||||| | ||||| ||||| | |||||||||| ||||||| ||||| |||||||||||||| ||||| || ||||| |||| | |
|
|
| T |
16594839 |
ctagagggaacatgaaggacgcgagcctggccacgagcgaccttttcccgaacaaaatgaatgtccatctcaatatgcttagtgcgctgatgctgcacag |
16594740 |
T |
|
| Q |
699 |
gattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcct |
752 |
Q |
| |
|
||||| || || ||||||| | ||||||| ||||||||||||||||| |||| |
|
|
| T |
16594739 |
gattaccagatagatagatggcactaacattgtcacaatacaccaaagtggcct |
16594686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 497 - 906
Target Start/End: Complemental strand, 33166307 - 33165895
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| | | || ||||| |||||||| || |||||||| |
|
|
| T |
33166307 |
ccccgcagtcgaagcgggaggttcacggacgctgagactggtccgaaaatcatcaaagagaatgcggggaagccctttggtgaagatatctgcaatctga |
33166208 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttg--atgttg |
693 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||||||| | || |||||| | |||||||| || ||||| ||||| ||||| |||||||| ||| || |
|
|
| T |
33166207 |
tgtcgagatggaacatggaggacacgtgcctgaccacgagctactttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgttgatatgctg |
33166108 |
T |
|
| Q |
694 |
caatggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagc |
793 |
Q |
| |
|
|| || || || |||||||||| | ||||||| ||||||||||||||||||||||| | || || || | |||||| | ||||| |||||| |
|
|
| T |
33166107 |
cacagggttgccagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctcctgtaagagattacgaagc |
33166008 |
T |
|
| Q |
794 |
caacaagattcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggt |
893 |
Q |
| |
|
||||| || ||||| || | ||||||||||||| | ||||| ||||| ||| | || |||| || |||||||||| ||||| ||||| | |||||| |
|
|
| T |
33166007 |
caacatgactcagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggt |
33165908 |
T |
|
| Q |
894 |
tgtcaccaagaaa |
906 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
33165907 |
tgtcaccgagaaa |
33165895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 503 - 749
Target Start/End: Original strand, 22207619 - 22207868
Alignment:
| Q |
503 |
agtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctggtgatga |
601 |
Q |
| |
|
||||||||||||||||| || ||| ||||| ||||| | |||||||| |||| ||| | | ||||| |||| |||||| ||||||| ||| |||| || |
|
|
| T |
22207619 |
agtcgaagcgggaggttcacaaacgtttagactggtctggaaatcatcgaaaaaaacacgaggtaggtttttggtgaagacgtcagcattctagtgacga |
22207718 |
T |
|
| Q |
602 |
ga--aggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatgg |
699 |
Q |
| |
|
|| |||||||||||||| |||||| ||||| | ||||||||| ||||||||||||| |||||||||| ||||||||| |||||||| || | || |
|
|
| T |
22207719 |
gagaaggaacatgaaggatgtgtgcctggccacgagcgaccttttctcgaacaaagtgaatgtccatctcaacatgtttagtgcgttgatgatgtactga |
22207818 |
T |
|
| Q |
700 |
attaacaacaaggtagatggaattaacattatcacaatacaccaaagtag |
749 |
Q |
| |
|
|||| ||| ||| |||||| | ||| |||||||||||| |||||||||| |
|
|
| T |
22207819 |
attaccaaaaagatagatgtcactaatattatcacaatataccaaagtag |
22207868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 609
Target Start/End: Original strand, 21875313 - 21875460
Alignment:
| Q |
465 |
aacataattacataaagtcaaacattctatcaccccgca--gtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactca |
562 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| || || ||| |||| |||||| || ||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
21875313 |
aacataattacagaaagtcaaacattttatcacaccccattgtcaaagcaggaggtacacaaacgcttagattggttcagaaatcatcaaaaagaactcg |
21875412 |
T |
|
| Q |
563 |
aagtaggccttt-gtgaagatgtcagcaatctggtgatgagaaggaac |
609 |
Q |
| |
|
| ||| | |||| ||||||||||||| ||| | ||| |||||||||| |
|
|
| T |
21875413 |
aggtatgtctttggtgaagatgtcagaaatgcgatgaagagaaggaac |
21875460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 779 - 825
Target Start/End: Original strand, 33362528 - 33362574
Alignment:
| Q |
779 |
agaagattgcgaagccaacaagattcagaaaccatattagcaacacc |
825 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
33362528 |
agaagatttcgaagccaacaagattaagaaacaacattagcaacacc |
33362574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 693
Target Start/End: Original strand, 26643686 - 26643731
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
26643686 |
gaacgaagtgaatatccatctcgatgtgtttagtgcgttgatgttg |
26643731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 693
Target Start/End: Original strand, 26749652 - 26749697
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
26749652 |
gaacgaagtgaatatccatctcgatgtgtttagtgcgttgatgttg |
26749697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 8e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 502 - 906
Target Start/End: Original strand, 1586196 - 1586600
Alignment:
| Q |
502 |
cagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctggtgatg |
600 |
Q |
| |
|
||||||||| | |||||| |||||| |||||| |||||| |||||||||||| |||| | | | || |||||| ||||||| || |||||||| || | |
|
|
| T |
1586196 |
cagtcgaagtgagaggttcacggacacttagactggtccaaaaatcatcaaatagaatgcgaggaagccctttggtgaagatatctgcaatctgatgtcg |
1586295 |
T |
|
| Q |
601 |
agaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatgga |
700 |
Q |
| |
|
||||||||||||||| || | |||||||||||| | || |||||||| ||||||||||| ||||| |||||||| || |||||||||||||||| || |
|
|
| T |
1586296 |
agaaggaacatgaagtacgcgtgcctgaccacgagctac-ttttccagtacaaagtgaatgtccatttcaatatgattggtacgttgatgttgcacaggg |
1586394 |
T |
|
| Q |
701 |
ttaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaag |
800 |
Q |
| |
|
||| || || |||||| | ||||||| ||||||||||||||||| | || | || ||| | |||| |||| | |||||| |||| |||||||| |
|
|
| T |
1586395 |
ttaccagagagatagatgacactaacattgtcacaatacaccaaagtgccatgaggaatagggaaatgaagttccagtaaaagattacgaatccaacaag |
1586494 |
T |
|
| Q |
801 |
attcagaaaccatattagcaacacctttgtattcggcttctgcattggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtgaggttgtcacc |
900 |
Q |
| |
|
| ||| | || | ||||||||||||| | ||||| ||||| ||| | || ||||| || || ||||| | |||||||||||| || | ||||||||||| |
|
|
| T |
1586495 |
actcatatacaacattagcaacacctctatattcagcttcagcactagactgagagagagtaggttgccttttggaagaccaagagataaggttgtcacc |
1586594 |
T |
|
| Q |
901 |
aagaaa |
906 |
Q |
| |
|
|||||| |
|
|
| T |
1586595 |
aagaaa |
1586600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 501 - 616
Target Start/End: Original strand, 10260446 - 10260562
Alignment:
| Q |
501 |
gcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctggtgat |
599 |
Q |
| |
|
||||||| || |||||||| ||||||||||||| ||||||| |||| |||||||||||| | |||| |||| |||||||| ||||| ||||| ||| |
|
|
| T |
10260446 |
gcagtcggagtgggaggttcacggacgcttagacatgtccgaatatcagcaaaaagaactcgagatagggctttggtgaagatatcagctatctgatgac |
10260545 |
T |
|
| Q |
600 |
gagaaggaacatgaagg |
616 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10260546 |
gagaaggaacatgaagg |
10260562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 693
Target Start/End: Complemental strand, 10260922 - 10260725
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatctgg |
595 |
Q |
| |
|
|||||||||| ||||||||||| || || |||| | ||||||||||||||||||||||||||| | |||| ||| ||||||| |||| ||||| |
|
|
| T |
10260922 |
ccccgcagtcagagcgggaggttcacaaacacttaaactggtccgaaaatcatcaaaaagaactcgagatagggatttggtgaagacatcagttatctga |
10260823 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
||| ||||||||||||||||| | ||| || |||| | || || || | ||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
10260822 |
tgacgagaaggaacatgaagggtgcgtgcttggccacaggctacattctcgcgtacaaagtgaatgtccatctcaatatgcttagtacgctgatgttg |
10260725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 695
Target Start/End: Complemental strand, 40623372 - 40623173
Alignment:
| Q |
495 |
caccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtgaagatgtcagcaatct |
593 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||| | || ||| |||||||||||| |||| | | | || ||||| |||||||| || |||||| |
|
|
| T |
40623372 |
caccccggagtcgaagggggaggttcacggacgcttatactgatccaaaaatcatcaaagagaatgcgaggaagccctttggtgaagatatcttcaatct |
40623273 |
T |
|
| Q |
594 |
ggtgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
|| |||| ||||||||||| || ||||||||||| | || |||||| ||||||| |||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
40623272 |
tatgtcgagatggaacatgaagtacgtgtgcctgaccacaagctactttttcccgaacaaaaagaatgtccatctcaatatgtttggta--ttgatgttg |
40623175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 497 - 753
Target Start/End: Complemental strand, 32175 - 31918
Alignment:
| Q |
497 |
ccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg-tgaagatgtcagcaatctgg |
595 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| | | | ||| ||||| ||||||||| || ||||| |
|
|
| T |
32175 |
ccccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaatagaatgcgaggaaggtctttggtgaagatgtatgcgatctga |
32076 |
T |
|
| Q |
596 |
tgatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgca |
695 |
Q |
| |
|
|| || | |||||||||||| | ||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||| || || ||||| |||| |
|
|
| T |
32075 |
tgtcttgaggaaacatgaaggacgcgagcctgaccacgagcaaccttttcccgaacaaaatgaatgtccatctcaatatgttttgtgcgctgatgctgca |
31976 |
T |
|
| Q |
696 |
atggattaacaacaaggtagatggaattaacattatcacaatacaccaaagtagcctg |
753 |
Q |
| |
|
|||||| || || ||||||| | ||||||| ||||||||||||||||| ||||| |
|
|
| T |
31975 |
caggattaccagatagatagatggcactaacattgtcacaatacaccaaagttgcctg |
31918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 429 - 496
Target Start/End: Complemental strand, 7304 - 7237
Alignment:
| Q |
429 |
gagagtaattacaaaataattaccaacacaactactaacataattacataaagtcaaacattctatca |
496 |
Q |
| |
|
||||||||||||||| |||| ||||||| || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7304 |
gagagtaattacaaagtaataaccaacataattactaacataattacataaggtcaaacattctatca |
7237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 7395 - 7339
Alignment:
| Q |
355 |
taaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacagtta |
411 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||| |
|
|
| T |
7395 |
taaaggaaatcaattcgtgaatttcattgataatgatcaagagtatatatatagtta |
7339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0936 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0936
Description:
Target: scaffold0936; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 495 - 575
Target Start/End: Complemental strand, 3649 - 3569
Alignment:
| Q |
495 |
caccccgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggcctttg |
575 |
Q |
| |
|
||||||| |||||||| |||||||| ||| ||||||| | |||||| || ||||||||||||||||| | ||||||||||| |
|
|
| T |
3649 |
caccccggagtcgaagagggaggttcacgaacgcttatactggtccaaatatcatcaaaaagaactcgaggtaggcctttg |
3569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 500 - 743
Target Start/End: Original strand, 1545879 - 1546125
Alignment:
| Q |
500 |
cgcagtcgaagcgggaggtttacggacgcttagaatggtccgaaaatcatcaaaaagaactcaaagtaggccttt-gtga--agatgtcagcaatctggt |
596 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | |||||||| || ||||| |||| | | | || ||||| |||| ||||||| |||||||| | |
|
|
| T |
1545879 |
cgcagtcgaagcgggaggttcacggacgcttagactagtccgaaagtcgtcaaatagaatacgagggagtcctttggtgaagagatgtctgcaatctgat |
1545978 |
T |
|
| Q |
597 |
gatgagaaggaacatgaaggacacatgcctgaccacgcgtgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaa |
696 |
Q |
| |
|
| || ||||||||||| || | ||||||||||| || |||||| | ||||| ||||| ||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
1545979 |
gtctggagggaacatgaagtacgcgtgcctgaccaccgactactttttcccgtacaaaatgaatgtccatctcaatatgtttggtacgctgatgctgcgc |
1546078 |
T |
|
| Q |
697 |
tggattaacaacaaggtagatggaattaacattatcacaatacacca |
743 |
Q |
| |
|
|||||| || || ||||||| | ||||||| |||||||| |||| |
|
|
| T |
1546079 |
aggattaccagatagatagatggcactaacattgtcacaatatacca |
1546125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 690
Target Start/End: Original strand, 12169785 - 12169827
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatg |
690 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
12169785 |
gaacaaagtggatatccatctcgatatgtttggtacgttgatg |
12169827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1396 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1396
Description:
Target: scaffold1396; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 481 - 558
Alignment:
| Q |
177 |
aataatgaaattcaatgtgatcaataataacatttagataaaataagaaaaccaaccttagagcaagtgcagcaggga |
254 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||| ||||| ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
481 |
aataatgaaacataatgtgatcagtaatgacatttaaataaagtaagaaaactcaccttagagcaattgcagcaggga |
558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 8253 - 8330
Alignment:
| Q |
177 |
aataatgaaattcaatgtgatcaataataacatttagataaaataagaaaaccaaccttagagcaagtgcagcaggga |
254 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||| ||||| ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
8253 |
aataatgaaacataatgtgatcagtaatgacatttaaataaagtaagaaaacttaccttagagcaattgcagcaggga |
8330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 752
Target Start/End: Complemental strand, 22332 - 22228
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatggattaacaacaaggtagatggaattaacattatcacaatacaccaaagt |
747 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || |||||||| | ||||| || || || || | | ||||||||||||||||||||||| | |
|
|
| T |
22332 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaact |
22233 |
T |
|
| Q |
748 |
agcct |
752 |
Q |
| |
|
||||| |
|
|
| T |
22232 |
agcct |
22228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 752
Target Start/End: Complemental strand, 1853799 - 1853695
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatggattaacaacaaggtagatggaattaacattatcacaatacaccaaagt |
747 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || |||||||| | ||||| || || || || | | ||||||||||||||||||||||| | |
|
|
| T |
1853799 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaact |
1853700 |
T |
|
| Q |
748 |
agcct |
752 |
Q |
| |
|
||||| |
|
|
| T |
1853699 |
agcct |
1853695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 752
Target Start/End: Complemental strand, 36650248 - 36650144
Alignment:
| Q |
648 |
gaacaaagtgaatatccatctcaatatgtttagtacgttgatgttgcaatggattaacaacaaggtagatggaattaacattatcacaatacaccaaagt |
747 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || |||||||| | ||||| || || || || | | ||||||||||||||||||||||| | |
|
|
| T |
36650248 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaact |
36650149 |
T |
|
| Q |
748 |
agcct |
752 |
Q |
| |
|
||||| |
|
|
| T |
36650148 |
agcct |
36650144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 693
Target Start/End: Original strand, 19336794 - 19336849
Alignment:
| Q |
638 |
accttttccagaacaaagtgaatatccatctcaatatgtttagtacgttgatgttg |
693 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
19336794 |
accttttcgcgaacaaaatgaatatccatctcaatatgttttgttctttgatgttg |
19336849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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