View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11441_low_11 (Length: 203)

Name: NF11441_low_11
Description: NF11441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11441_low_11
NF11441_low_11
[»] chr3 (14 HSPs)
chr3 (14-203)||(11534679-11534869)
chr3 (99-200)||(29398487-29398588)
chr3 (92-160)||(27786526-27786594)
chr3 (99-203)||(26331244-26331347)
chr3 (97-139)||(26601970-26602012)
chr3 (99-164)||(26331227-26331292)
chr3 (99-203)||(27786465-27786570)
chr3 (128-200)||(33068230-33068303)
chr3 (126-199)||(45799935-45800008)
chr3 (166-203)||(47948056-47948093)
chr3 (102-198)||(105403-105499)
chr3 (99-159)||(9502881-9502941)
chr3 (103-139)||(39964308-39964344)
chr3 (99-159)||(55121183-55121243)
[»] chr7 (17 HSPs)
chr7 (119-198)||(48634206-48634285)
chr7 (99-203)||(29229682-29229786)
chr7 (101-196)||(39751076-39751171)
chr7 (94-203)||(35985264-35985373)
chr7 (94-203)||(36006672-36006781)
chr7 (94-203)||(35985286-35985396)
chr7 (94-203)||(36006694-36006804)
chr7 (99-198)||(35274444-35274543)
chr7 (92-164)||(28038565-28038637)
chr7 (126-198)||(12423682-12423754)
chr7 (92-163)||(3094402-3094473)
chr7 (99-198)||(35274422-35274521)
chr7 (99-149)||(3485903-3485953)
chr7 (170-203)||(3485903-3485936)
chr7 (99-196)||(12423679-12423776)
chr7 (167-203)||(17801460-17801496)
chr7 (101-149)||(17801463-17801511)
[»] chr1 (24 HSPs)
chr1 (99-203)||(35489223-35489328)
chr1 (99-198)||(457604-457703)
chr1 (99-198)||(30412606-30412705)
chr1 (99-160)||(21945067-21945128)
chr1 (99-203)||(8174122-8174226)
chr1 (99-198)||(47911859-47911958)
chr1 (91-149)||(1609965-1610023)
chr1 (99-141)||(38636238-38636280)
chr1 (99-160)||(4604908-4604969)
chr1 (99-198)||(50692094-50692195)
chr1 (101-192)||(46673851-46673942)
chr1 (99-198)||(457582-457681)
chr1 (99-190)||(4540660-4540751)
chr1 (99-198)||(30412628-30412727)
chr1 (99-154)||(38636278-38636333)
chr1 (99-149)||(24419542-24419592)
chr1 (160-198)||(37247603-37247641)
chr1 (99-200)||(4540630-4540731)
chr1 (92-149)||(10332039-10332096)
chr1 (101-198)||(47911881-47911978)
chr1 (130-174)||(15601886-15601930)
chr1 (118-198)||(39940515-39940595)
chr1 (101-161)||(42074144-42074204)
chr1 (94-161)||(50403093-50403161)
[»] chr5 (20 HSPs)
chr5 (101-172)||(28351002-28351073)
chr5 (99-200)||(19087807-19087908)
chr5 (92-200)||(8850293-8850401)
chr5 (99-200)||(17768039-17768138)
chr5 (99-200)||(12645378-12645479)
chr5 (101-198)||(35463964-35464061)
chr5 (127-201)||(15968343-15968417)
chr5 (99-201)||(16829212-16829313)
chr5 (99-198)||(28499791-28499891)
chr5 (99-159)||(40773043-40773103)
chr5 (99-198)||(19087787-19087886)
chr5 (118-200)||(1098656-1098738)
chr5 (99-149)||(18550986-18551036)
chr5 (127-201)||(22731300-22731374)
chr5 (132-198)||(38244128-38244194)
chr5 (103-199)||(5240239-5240336)
chr5 (102-198)||(5354761-5354858)
chr5 (91-200)||(41527005-41527114)
chr5 (100-152)||(14958921-14958973)
chr5 (120-200)||(30920024-30920104)
[»] chr8 (12 HSPs)
chr8 (99-197)||(14578535-14578633)
chr8 (99-198)||(30857260-30857360)
chr8 (156-200)||(5311393-5311437)
chr8 (157-203)||(9503519-9503565)
chr8 (99-149)||(9503532-9503582)
chr8 (92-201)||(20694421-20694531)
chr8 (127-201)||(35011244-35011318)
chr8 (99-203)||(1784098-1784203)
chr8 (99-160)||(9503612-9503673)
chr8 (129-198)||(12381119-12381188)
chr8 (170-198)||(9503623-9503651)
chr8 (92-152)||(10184633-10184693)
[»] scaffold0003 (1 HSPs)
scaffold0003 (99-203)||(320697-320802)
[»] chr4 (17 HSPs)
chr4 (126-203)||(21861077-21861154)
chr4 (126-203)||(21916940-21917017)
chr4 (97-154)||(23614451-23614508)
chr4 (93-154)||(33508608-33508669)
chr4 (100-203)||(6371925-6372029)
chr4 (99-203)||(7277443-7277547)
chr4 (101-159)||(47493212-47493270)
chr4 (92-198)||(51313469-51313575)
chr4 (168-199)||(22295848-22295879)
chr4 (119-198)||(51313498-51313577)
chr4 (101-159)||(32125409-32125467)
chr4 (99-203)||(38562135-38562240)
chr4 (92-149)||(20291863-20291920)
chr4 (136-197)||(25063453-25063514)
chr4 (99-203)||(25129716-25129820)
chr4 (99-159)||(27990282-27990342)
chr4 (121-201)||(48601136-48601216)
[»] chr6 (8 HSPs)
chr6 (92-200)||(7055588-7055696)
chr6 (91-149)||(2271206-2271264)
chr6 (99-159)||(674121-674181)
chr6 (160-200)||(862893-862933)
chr6 (97-149)||(26478523-26478575)
chr6 (100-201)||(3846459-3846561)
chr6 (99-149)||(5069949-5069999)
chr6 (129-201)||(20703432-20703505)
[»] chr2 (8 HSPs)
chr2 (92-198)||(33853861-33853967)
chr2 (99-164)||(31719190-31719255)
chr2 (99-203)||(30429095-30429198)
chr2 (99-201)||(30429078-30429180)
chr2 (167-200)||(9113998-9114031)
chr2 (155-200)||(41119983-41120028)
chr2 (101-198)||(41221661-41221758)
chr2 (166-198)||(10495721-10495753)
[»] scaffold0514 (1 HSPs)
scaffold0514 (99-149)||(5829-5879)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 11534679 - 11534869
Alignment:
Q  14 agagatcttataactgagaaaacaatttggcatcttagtgatcagcaaataaagaatgtttgtaagtgttacgtaaaatccgattacatttataagc-aa 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||    
T  11534679 agagatcttataaccgagaaaacaatttggcatcttagtgatcagcaaataaagaatgtttgtaagtgttacataaaatccggttacatttataagcaaa 11534778  T
Q  113 aaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaattgt 203  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11534779 aaaacgacttttaagattcattgaatacctaatgtatatggtctatatataggtcagatacattaaatattcaatgaatctaaaaaattgt 11534869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 29398588 - 29398487
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||| |||||   | |||| || |||||||||||| |||||||| |||| |||||||||  || |||||||||||||  ||| ||||||||||    
T  29398588 acatttataagaaaaaatatattttttaggttcattgaatacataatgtatttggtttatatatagactaaatacattaaatatcaaataaatctaaaaa 29398489  T
Q  199 at 200  Q
    ||    
T  29398488 at 29398487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 27786594 - 27786526
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatat 160  Q
    |||||| |||||||||||||||| || |||||| || ||||||||||||||||| ||| |||| |||||    
T  27786594 tccgatcacatttataagcaaaacacaactttttaggttcattgaatacctaatatatttggtctatat 27786526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 26331347 - 26331244
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||| |||||| || |||||||||   ||||||| | |||| |||||||||   ||||||||||   |||||||||| ||| |||    
T  26331347 acatttataagcaaaaaacaactttttaggttcattgaaagactaatgt-tttggtctatatatagaccagatacattagtcattcaatgaacctagaaa 26331249  T
Q  199 attgt 203  Q
    |||||    
T  26331248 attgt 26331244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 26601970 - 26602012
Alignment:
Q  97 ttacatttataagcaaaaaacgacttttgagattcattgaata 139  Q
    ||||||||||||||||||||| |||||| || |||||||||||    
T  26601970 ttacatttataagcaaaaaacaactttttaggttcattgaata 26602012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 26331227 - 26331292
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatatag 164  Q
    ||||||||||||||||||| | |||  || ||||||||||  ||||||||| |||| |||||||||    
T  26331227 acatttataagcaaaaaacaattttctaggttcattgaatgactaatgtatctggtctatatatag 26331292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 27786465 - 27786570
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtat-atataggttagatacattaaatattcaatgaatctaaaa 197  Q
    ||||||||||||||||||| |||||| || ||||  |||||||  |||||| |||||||| ||||||   | ||| ||||  ||||||||||| ||||||    
T  27786465 acatttataagcaaaaaactactttttaggttcacggaataccctatgtatttggtgtataatatagaccaaatatattaggtattcaatgaacctaaaa 27786564  T
Q  198 aattgt 203  Q
    | ||||    
T  27786565 agttgt 27786570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 33068230 - 33068303
Alignment:
Q  128 attcattgaatacctaatgtatatggtgtata-tataggttagatacattaaatattcaatgaatctaaaaaat 200  Q
    ||||||||||||| |||||||| |||| |||| |||||   | ||| |||||||||||||||||| ||||||||    
T  33068230 attcattgaatacataatgtatttggtctataatatagaccaaatatattaaatattcaatgaatgtaaaaaat 33068303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 45799935 - 45800008
Alignment:
Q  126 agattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaa 199  Q
    |||||||||  ||| ||||||||| |||| || |||||| | | ||||||||  ||||||||||||||||||||    
T  45799935 agattcattttatatctaatgtatttggtctacatatagatcaaatacattatgtattcaatgaatctaaaaaa 45800008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 47948093 - 47948056
Alignment:
Q  166 ttagatacattaaatattcaatgaatctaaaaaattgt 203  Q
    |||||||||| || ||||||||||||||||||||||||    
T  47948093 ttagatacataaactattcaatgaatctaaaaaattgt 47948056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 105499 - 105403
Alignment:
Q  102 tttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||   ||||||| || |||||| ||||| | |||||| |||| ||||||| | | | |||||| |  |||||||||||||||||||    
T  105499 tttataagcaaaagttgactttttaggttcattcaatacattatgtatgtggtctatatatggttcacatacatcatttattcaatgaatctaaaaa 105403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 9502881 - 9502941
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata 159  Q
    ||||||||||| ||||||  |||||| ||||||||| || ||||||||||| |||| ||||    
T  9502881 acatttataagtaaaaaatcactttttagattcattcaacacctaatgtatttggtctata 9502941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 39964308 - 39964344
Alignment:
Q  103 ttataagcaaaaaacgacttttgagattcattgaata 139  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  39964308 ttataagcaaaaaactactttttagattcattgaata 39964344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 55121183 - 55121243
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata 159  Q
    |||||||||| |||||||| | |||| || ||||||||||| ||||||||| |||| ||||    
T  55121183 acatttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtttata 55121243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 48634206 - 48634285
Alignment:
Q  119 acttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||| ||||||||||||||| |||||||| |||| ||||||||| ||| |||||||||||||| ||||||||||||||    
T  48634206 actttttagattcattgaatacataatgtatttggtctatatatagattaaatacattaaatattgaatgaatctaaaaa 48634285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 29229682 - 29229786
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||| |||||||||||||| |||||| ||||||||| || | |||||| || |||| ||||||||||| ||||||||||  ||||||||||| |||||||    
T  29229682 acatatataagcaaaaaacaactttttagattcattaaacaactaatgcatttggtctatatataggtcagatacattagttattcaatgaacctaaaaa 29229781  T
Q  199 attgt 203  Q
     ||||    
T  29229782 gttgt 29229786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 39751076 - 39751171
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaa 196  Q
    ||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| ||||||| ||| | ||||||||  |||||||||||| ||||    
T  39751076 atttataagtaaaaaacaactttttagattcattaaatatctaatgtatatggtctatatattggtaaaatacattagttattcaatgaatttaaa 39751171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 35985264 - 35985373
Alignment:
Q  94 cgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatct 193  Q
    |||| |||||||||||||||| || |||||| ||||| |||||||| ||||||||||||   |||||||| || | ||||||||  |||||||| |||||    
T  35985264 cgatcacatttataagcaaaatacaactttttagattaattgaataactaatgtatatgacctatatataagtcaaatacattagttattcaattaatct 35985363  T
Q  194 aaaaaattgt 203  Q
    ||||| ||||    
T  35985364 aaaaagttgt 35985373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 36006672 - 36006781
Alignment:
Q  94 cgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatct 193  Q
    |||| |||||||||||||||| || |||||| ||||| |||||||| ||||||||||||   |||||||| || | ||||||||  |||||||| |||||    
T  36006672 cgatcacatttataagcaaaatacaactttttagattaattgaataactaatgtatatgacctatatataagtcaaatacattagttattcaattaatct 36006771  T
Q  194 aaaaaattgt 203  Q
    ||||| ||||    
T  36006772 aaaaagttgt 36006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 35985396 - 35985286
Alignment:
Q  94 cgattacatttataagcaaa-aaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatc 192  Q
    |||||||||||||||| ||| |||| |||||| ||||| |||||||| ||||||||| ||   ||||||||||| | ||||||||  |||||||| ||||    
T  35985396 cgattacatttataagaaaagaaacaactttttagattaattgaataactaatgtatttgacttatatataggtcatatacattagttattcaattaatc 35985297  T
Q  193 taaaaaattgt 203  Q
    |||||| ||||    
T  35985296 taaaaagttgt 35985286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 36006804 - 36006694
Alignment:
Q  94 cgattacatttataagcaaa-aaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatc 192  Q
    |||||||||||||||| ||| |||| |||||| ||||| |||||||| ||||||||| ||   ||||||||||| | ||||||||  |||||||| ||||    
T  36006804 cgattacatttataagaaaagaaacaactttttagattaattgaataactaatgtatttgacttatatataggtcatatacattagttattcaattaatc 36006705  T
Q  193 taaaaaattgt 203  Q
    |||||| ||||    
T  36006704 taaaaagttgt 36006694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 35274543 - 35274444
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||   |||||| || |||||||||||| |||||||| |||| ||||||| |   | |||||||||||||| |||||||| |||||    
T  35274543 acatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaa 35274444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 28038637 - 28038565
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatatag 164  Q
    |||| ||||||||||||||||||||  |||||| ||||||||| ||||| |||||||| ||||  ||||||||    
T  28038637 tccggttacatttataagcaaaaaaacactttttagattcattcaatacttaatgtatttggtcaatatatag 28038565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 12423682 - 12423754
Alignment:
Q  126 agattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||| |||| |||| |||| |||| ||||||||||| | ||||||||  ||||||||||| |||||||    
T  12423682 agattcattcaatatctaacgtatttggtctatatataggtcaaatacattatgtattcaatgaacctaaaaa 12423754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 3094473 - 3094402
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatata 163  Q
    |||||| ||||||||||| ||||||  |||||| || ||||||||||| ||||||||  |||| ||||||||    
T  3094473 tccgatcacatttataagtaaaaaataacttttaaggttcattgaataactaatgtacctggtctatatata 3094402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 35274422 - 35274521
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||  ||||||  |||||||| ||||  |||||||| ||||  ||||||||   | ||||||||  ||||||||||| |||||||    
T  35274422 acatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 35274521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 3485953 - 3485903
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    |||||||||||||||| || | |||| |||||||||||||| |||||||||    
T  3485953 acatttataagcaaaacacaattttttagattcattgaatatctaatgtat 3485903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 3485903 - 3485936
Alignment:
Q  170 atacattaaatattcaatgaatctaaaaaattgt 203  Q
    |||||||| |||||||||||||||||||||||||    
T  3485903 atacattagatattcaatgaatctaaaaaattgt 3485936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 12423776 - 12423679
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaa 196  Q
    |||||||||||||||||   |||||| || |||||||||||| |||||||| ||   |||||||||   | |||| ||| ||||| ||||||||||||    
T  12423776 acatttataagcaaaaatgtactttttaggttcattgaatacataatgtatttgacctatatatagaccaaatacgttagatattgaatgaatctaaa 12423679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 17801460 - 17801496
Alignment:
Q  167 tagatacattaaatattcaatgaatctaaaaaattgt 203  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  17801460 tagatacattaattattcaatgaatctaaaaagttgt 17801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 17801511 - 17801463
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    |||||||| |||||||| |||||| ||||||||||||||  ||||||||    
T  17801511 atttataatcaaaaaacaactttttagattcattgaataattaatgtat 17801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 35489328 - 35489223
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtg-tatatataggttagatacattaaatattcaatgaatctaaaa 197  Q
    |||||||||||||||||| ||||||| |  | |||||||||  ||||| || ||||| ||| ||||||||||||||||||| ||||||||| ||||||||    
T  35489328 acatttataagcaaaaaatgactttttatgtacattgaataattaatgaatctggtgatatttataggttagatacattaattattcaatgtatctaaaa 35489229  T
Q  198 aattgt 203  Q
    | ||||    
T  35489228 agttgt 35489223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 457703 - 457604
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||   |||||| || |||||||||||| |||||||| |||| ||||||| |   | |||||||||||||| |||||||| |||||    
T  457703 acatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaa 457604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 30412606 - 30412705
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||   |||||| || |||||||||||| |||||||| |||| ||||||| |   | |||||||||||||| |||||||| |||||    
T  30412606 acatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaa 30412705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 21945067 - 21945128
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatat 160  Q
    ||||||||||| ||||||  |||||| |||||||||||||||||||||||| |||| |||||    
T  21945067 acatttataagtaaaaaatcactttttagattcattgaatacctaatgtatttggtatatat 21945128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 8174226 - 8174122
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||| || |||||| | |||||||||||   |||||||| |||| |||||| |  |  |||||| || |||||||||||| |||||||    
T  8174226 acatttataagcaaaacacaactttttatattcattgaatgattaatgtatctggtctatataaaaatcggatacaatagatattcaatgaacctaaaaa 8174127  T
Q  199 attgt 203  Q
    |||||    
T  8174126 attgt 8174122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 47911859 - 47911958
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||| ||||||   |||||| || |||||||||||| |||||||| |||| ||||||| |   | |||||||||||||| |||||||| |||||    
T  47911859 acatttataaacaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaa 47911958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 1609965 - 1610023
Alignment:
Q  91 atccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    ||||||| ||||||||||||||||||| |||||| |||| |||||||||  ||||||||    
T  1609965 atccgatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtat 1610023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 38636238 - 38636280
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacc 141  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  38636238 acatttataagcaaaaaacaactttttagattcattgaatacc 38636280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 4604969 - 4604908
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatat 160  Q
    ||||||||||||||||||  |||||| || || |||||||||||||||||| |||| |||||    
T  4604969 acatttataagcaaaaaatcactttttaggtttattgaatacctaatgtatttggtatatat 4604908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 50692094 - 50692195
Alignment:
Q  99 acatttataagcaaaaaa-cgacttttgagattcattgaatacctaatgtatatggtgtata-tataggttagatacattaaatattcaatgaatctaaa 196  Q
    |||||||||||||||||| | |||||| || |||||| |||||||||||||| |||| |||| ||||| | | ||||||||  ||||| | |||||||||    
T  50692094 acatttataagcaaaaaaactactttttaggttcattaaatacctaatgtatttggtatatattatagatcaaatacattacgtattctaagaatctaaa 50692193  T
Q  197 aa 198  Q
    ||    
T  50692194 aa 50692195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 46673851 - 46673942
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata-tataggttagatacattaaatattcaatgaatc 192  Q
    ||||||||| ||||||| |||||| |||||||||||||| ||||| ||| |||| || | ||||| | | |||||||||||||||||| ||||    
T  46673851 atttataag-aaaaaactactttttagattcattgaatatctaatatatttggtctagattatagatcaaatacattaaatattcaataaatc 46673942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 457582 - 457681
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||  ||||||  |||||||| ||||  |||||||| ||||  ||||||||   | ||||||||  ||||||||||| |||||||    
T  457582 acatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 457681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 4540751 - 4540660
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaa 190  Q
    ||||||||||||||||||  | |||| ||||||||| ||||| |||||||| ||||  ||||||||     |||||||| ||||||||||||    
T  4540751 acatttataagcaaaaaagcattttttagattcattcaatacttaatgtatttggtcaatatatagaccgaatacattatatattcaatgaa 4540660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 30412727 - 30412628
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||  ||||||  |||||||| ||||  |||||||| ||||  ||||||||   | ||||||||  ||||||||||| |||||||    
T  30412727 acatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 30412628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 38636333 - 38636278
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggt 154  Q
    ||||||| ||||||||||| |||||| ||||| |||||||| ||||||||| ||||    
T  38636333 acatttaaaagcaaaaaacaactttttagattgattgaataactaatgtatttggt 38636278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 24419542 - 24419592
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    ||||||||||||||||||  |||||| |||||||||||| | |||||||||    
T  24419542 acatttataagcaaaaaagaactttttagattcattgaagaactaatgtat 24419592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 37247641 - 37247603
Alignment:
Q  160 tataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  37247641 tataggttagatacattaattattcaatgtatctaaaaa 37247603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 4540630 - 4540731
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||   |||||  || |||||||||||  ||||||||  ||| ||||||| |   | ||||||||| |||| ||||||||||||||    
T  4540630 acatttataagcaaaaatgtactttataggttcattgaatatataatgtattcggtctatatattgaccaaatacattaagtattgaatgaatctaaaaa 4540729  T
Q  199 at 200  Q
    ||    
T  4540730 at 4540731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 10332039 - 10332096
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    ||||||||  |||||||||||||||| |||||| | ||||| |||||| |||||||||    
T  10332039 tccgattatttttataagcaaaaaacaactttttaaattcaatgaataactaatgtat 10332096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 47911978 - 47911881
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||  ||||||  |||||||| ||||  |||||||| ||||  ||||||||   | ||||||||  ||||||||||| |||||||    
T  47911978 atttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 47911881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 15601930 - 15601886
Alignment:
Q  130 tcattgaatacctaatgtatatggtgtatatataggttagataca 174  Q
    ||||| ||||||| ||||||||||| ||||||||||||| |||||    
T  15601930 tcattaaatacctgatgtatatggtctatatataggttaaataca 15601886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 39940515 - 39940595
Alignment:
Q  118 gacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||| || |||||| ||||  | ||||||||||| |||||||||  || ||||||||  |||| ||||||||||||||    
T  39940515 gactttttaggttcatttaataaatgatgtatatggtttatatatagactacatacattatttattgaatgaatctaaaaa 39940595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 42074144 - 42074204
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatata 161  Q
    ||||||||||||||||  |||||| | |||||||| |||| |||||||| |||| ||||||    
T  42074144 atttataagcaaaaaattactttttaaattcattggatacttaatgtatttggtatatata 42074204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 50403093 - 50403161
Alignment:
Q  94 cgattacatttataagcaaaaa-acgacttttgagattcattgaatacctaatgtatatggtgtatata 161  Q
    |||| ||||||||||||||||| || |||||| | ||| |||||||| ||||||||| |||| ||||||    
T  50403093 cgatcacatttataagcaaaaacacaactttttaaatttattgaataactaatgtatctggtctatata 50403161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 28351073 - 28351002
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagata 172  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||||  ||| ||| |||||||||||||    
T  28351073 atttataagcaaaaaacaactttttagattcattgaataactaatgtatccggtctatttataggttagata 28351002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 19087908 - 19087807
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||   |||||| || |||||||||||| |||||||| |||| ||||||| |   | ||||||||| |||||||||||| ||||||    
T  19087908 acatttataagcaaaaatgtactttttaggttcattgaatacataatgtatttggtctatatattgaacaaatacattaagtattcaatgaatataaaaa 19087809  T
Q  199 at 200  Q
    ||    
T  19087808 at 19087807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 8850401 - 8850293
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaat 191  Q
    |||||| ||||||||||| |||||   |||||| || |||||||||||| |||||||| |||| ||||||| |   | |||||||||||||| |||||||    
T  8850401 tccgatcacatttataagtaaaaatgtactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaat 8850302  T
Q  192 ctaaaaaat 200  Q
    | |||||||    
T  8850301 caaaaaaat 8850293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 17768138 - 17768039
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||| |||||||||||||  | |||| || |||||||||||| |||||||| |||| ||||||||    | |||||||||||||| ||||||||||||||    
T  17768138 acatatataagcaaaaaattattttttaggttcattgaatacataatgtatttggtctatatata--ccaaatacattaaatattgaatgaatctaaaaa 17768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 12645479 - 12645378
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||| |||||||||||||  |||||| |  |||||||||||| |||||||| |||| ||||||||      |||||||||||||| ||||||||||||||    
T  12645479 acatatataagcaaaaaaatactttttaagttcattgaatacataatgtatttggtctatatataaaccgaatacattaaatattgaatgaatctaaaaa 12645380  T
Q  199 at 200  Q
    ||    
T  12645379 at 12645378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 35463964 - 35464061
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||  | |||| || ||||||||||| |||||||||  ||| |||||||| |||||||||||||  || |||| ||| |||||||    
T  35463964 atttataagcaaaaaataattttttaggttcattgaataactaatgtatccggtctatatatatgttagatacattagctactcaaagaacctaaaaa 35464061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 15968417 - 15968343
Alignment:
Q  127 gattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaatt 201  Q
    |||||||||||||  | |||||| |||| ||| | |||| |||||||||||| |||| |||||||||||||||||    
T  15968417 gattcattgaatagttgatgtatttggtctatttctaggctagatacattaattattgaatgaatctaaaaaatt 15968343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 16829212 - 16829313
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||   |||||| |  ||||||||||| ||||||||| | || |||||| |||| ||||||||||  ||||| ||||| |||||||    
T  16829212 acatttataagcaaaaata-actttttaagttcattgaatatctaatgtatctagtttatataaaggtcagatacattagttattcgatgaacctaaaaa 16829310  T
Q  199 att 201  Q
    |||    
T  16829311 att 16829313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 28499791 - 28499891
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggt-gtatatataggttagatacattaaatattcaatgaatctaaaa 197  Q
    ||||||||||||||||||  | |||| |||||||||||||| |||||||||  |||  ||  ||||| ||| ||||||||| ||||||||  ||||||||    
T  28499791 acatttataagcaaaaaataattttttagattcattgaataactaatgtatccggtcataattatagattaaatacattaattattcaatatatctaaaa 28499890  T
Q  198 a 198  Q
    |    
T  28499891 a 28499891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 40773103 - 40773043
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata 159  Q
    ||||||||||||||||||| |||||| || |||||| || ||||||||||| |||| ||||    
T  40773103 acatttataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 40773043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 19087787 - 19087886
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||  | |||| | ||||||||||||| |||||||| || |  ||||||||   | ||||||||  ||||||||||| |||||||    
T  19087787 acatttataagcaaaaaaatattttttatattcattgaatacttaatgtatttgttcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 19087886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 1098656 - 1098738
Alignment:
Q  118 gacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaat 200  Q
    ||||||| ||||||||| ||||  | |||||| |||| |||||||||  || ||||||||  |||| ||||||||||||||||    
T  1098656 gactttttagattcattcaataaatgatgtatgtggtctatatatagactacatacattatttattaaatgaatctaaaaaat 1098738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 18550986 - 18551036
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    |||||||||||||||| || ||| || |||||||||||||| |||||||||    
T  18550986 acatttataagcaaaacacaactgtttagattcattgaataactaatgtat 18551036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 22731300 - 22731374
Alignment:
Q  127 gattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaatt 201  Q
    |||||||||||||  | |||||| |||| ||| | |||| ||| |||||||| |||| |||||||||||||||||    
T  22731300 gattcattgaatagttgatgtatttggtctatttctaggctaggtacattaattatttaatgaatctaaaaaatt 22731374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 38244128 - 38244194
Alignment:
Q  132 attgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||| |||||||| |||  ||||||||| | | |||||||| || |||||||||||||||||    
T  38244128 attgaatacataatgtatttggactatatatagatcaaatacattagatgttcaatgaatctaaaaa 38244194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 5240239 - 5240336
Alignment:
Q  103 ttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata-tataggttagatacattaaatattcaatgaatctaaaaaa 199  Q
    ||||||||||||   || |||| |||| |||||||||  |||||||| | || |||| || || ||||||||||||| ||||||||| ||||||||||    
T  5240239 ttataagcaaaatttgattttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattattcaatgtatctaaaaaa 5240336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 5354761 - 5354858
Alignment:
Q  102 tttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtat-atataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||| |||||| || |||| ||||||||  |||||| |||| ||| ||||||  || |||||| || ||||||||| | |||||||    
T  5354761 tttataagcaaaaaactactttttaggttcaatgaataccacatgtatttggtatataatatagactaaatacataaagtattcaatggacctaaaaa 5354858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 41527114 - 41527005
Alignment:
Q  91 atccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaa 190  Q
    ||||||| |||||||||||||||||   |||||  |  |||||||||||  |||| ||| |||||||| ||| |   | ||||||||| |||| ||||||    
T  41527114 atccgatcacatttataagcaaaaatgtactttataagttcattgaatatataatatatttggtgtatctattgaccaaatacattaagtattgaatgaa 41527015  T
Q  191 tctaaaaaat 200  Q
    ||||||||||    
T  41527014 tctaaaaaat 41527005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 14958973 - 14958921
Alignment:
Q  100 catttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatg 152  Q
    |||| |||||||||||||  ||||| | |||||||||||| ||||||||||||    
T  14958973 cattcataagcaaaaaacatctttttaaattcattgaataactaatgtatatg 14958921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 30920104 - 30920024
Alignment:
Q  120 cttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaat 200  Q
    ||||| ||||||||| |||||||||||||| |||| || ||||||  || ||||||||  |||| ||| |||||| |||||    
T  30920104 ctttttagattcattaaatacctaatgtatttggtctacatatagaataaatacattatgtatttaataaatctataaaat 30920024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 14578633 - 14578535
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaa 197  Q
    |||||||||||||||| || |||||| |||||||||||| |  |||| |||  ||| ||||||||| | ||||||||||| ||||||||||| ||||||    
T  14578633 acatttataagcaaaatacaactttttagattcattgaacaaataatatatcgggtctatatatagatcagatacattaattattcaatgaacctaaaa 14578535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 30857360 - 30857260
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata-tataggttagatacattaaatattcaatgaatctaaaa 197  Q
    ||||||||||||||||||  |||||| ||||| ||||||| |||||| ||| || |||||| ||||    | ||||||||||||||||||||||||||||    
T  30857360 acatttataagcaaaaaattactttttagatttattgaatgcctaatatatttgatgtataatatataccaaatacattaaatattcaatgaatctaaaa 30857261  T
Q  198 a 198  Q
    |    
T  30857260 a 30857260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 5311393 - 5311437
Alignment:
Q  156 tatatataggttagatacattaaatattcaatgaatctaaaaaat 200  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||    
T  5311393 tatatatagattaaatacattaattattcaatgaatctaaaaaat 5311437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 9503519 - 9503565
Alignment:
Q  157 atatataggttagatacattaaatattcaatgaatctaaaaaattgt 203  Q
    |||||||| ||| ||||||||||||||||||||||| ||||| ||||    
T  9503519 atatatagattaaatacattaaatattcaatgaatcgaaaaagttgt 9503565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 9503582 - 9503532
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    ||||||||||||||||||| ||||||  |||||||||||||  ||||||||    
T  9503582 acatttataagcaaaaaacaactttttcgattcattgaatatttaatgtat 9503532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 20694421 - 20694531
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgt-atatataggttagatacattaaatattcaatgaa 190  Q
    |||| |||||||||||| |||||| | |||||| |||| |||||||||  |||| |||   ||   || ||||||||||||||||| | ||||||||| |    
T  20694421 tccggttacatttataaacaaaaatcaactttttagatacattgaataattaatttatcaagtcacatttataggttagatacattgactattcaatgta 20694520  T
Q  191 tctaaaaaatt 201  Q
    |||||||||||    
T  20694521 tctaaaaaatt 20694531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 35011318 - 35011244
Alignment:
Q  127 gattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaatt 201  Q
    |||||||||||||  | |||||| |||| ||| | |||| ||| |||||||| |||| |||||||||||||||||    
T  35011318 gattcattgaatagttgatgtatttggtctatttctaggctaggtacattaattattgaatgaatctaaaaaatt 35011244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 1784098 - 1784203
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtg-tatatataggttagatacattaaatattcaatgaatctaaaa 197  Q
    |||||||||| ||||||| || |||| |||| |||||||||  ||||||||  |||  ||| ||| ||||||||||||||| ||||  ||| ||||||||    
T  1784098 acatttataaacaaaaaatgattttttagatacattgaatatttaatgtatccggtcatatttatgggttagatacattaattattagatgtatctaaaa 1784197  T
Q  198 aattgt 203  Q
    | ||||    
T  1784198 agttgt 1784203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 9503673 - 9503612
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatat 160  Q
    |||||||||| |||||||  |||||| ||||||||||||||  |||||||| |||| |||||    
T  9503673 acatttataaacaaaaaataactttttagattcattgaatatttaatgtatttggtctatat 9503612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 12381119 - 12381188
Alignment:
Q  129 ttcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||| |||| ||||||||| |||| |||||| ||  || |||||||  ||||||||||||||||||||    
T  12381119 ttcattcaatatctaatgtatttggtctatatacagactaaatacattttatattcaatgaatctaaaaa 12381188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 9503623 - 9503651
Alignment:
Q  170 atacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||||||||||||||    
T  9503623 atacattaaatattcaatgaatctaaaaa 9503651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 10184693 - 10184633
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatg 152  Q
    |||||| | ||||||||| ||||| |||||||| ||||||||||||||  | |||||||||    
T  10184693 tccgatcatatttataagaaaaaatcgactttttagattcattgaataattgatgtatatg 10184633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 320802 - 320697
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatatagg-ttagatacattaaatattcaatgaatctaaaa 197  Q
    |||||||||||||||| || |||||| ||||||||| |||| ||||| ||| |||| |||| ||||| ||||||||||||  |||||||  || ||||||    
T  320802 acatttataagcaaaacacaactttttagattcattaaataactaatatatctggtttataaataggattagatacattagttattcaacaaacctaaaa 320703  T
Q  198 aattgt 203  Q
    ||||||    
T  320702 aattgt 320697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 21861154 - 21861077
Alignment:
Q  126 agattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaattgt 203  Q
    ||||||||| ||||  |||||||| |||| |||||| | || ||||||||||| ||||||||| ||||||||||||||    
T  21861154 agattcattaaataattaatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 21917017 - 21916940
Alignment:
Q  126 agattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaattgt 203  Q
    ||||||||| ||||  |||||||| |||| |||||| | || ||||||||||| ||||||||| ||||||||||||||    
T  21917017 agattcattaaataattaatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21916940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 23614508 - 23614451
Alignment:
Q  97 ttacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggt 154  Q
    ||||||||||||||||||||| |||||| || ||||||||| ||||||||||| ||||    
T  23614508 ttacatttataagcaaaaaaccactttttaggttcattgaacacctaatgtatttggt 23614451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 33508669 - 33508608
Alignment:
Q  93 ccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggt 154  Q
    ||||| |||||||||||||||| || |||| | |||||||||||||| ||||||||||||||    
T  33508669 ccgatcacatttataagcaaaacacaacttgttagattcattgaataactaatgtatatggt 33508608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 6371925 - 6372029
Alignment:
Q  100 catttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatgg-tgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||| ||||||| || | |||||||||  |||||||||||| |  || ||| ||||||||||||||  |||| |||| | |||||||    
T  6371925 catttataagcaaaaaatgactttttaggtacattgaataattaatgtatatggttacatttatgggttagatacattagttattaaatgtacctaaaaa 6372024  T
Q  199 attgt 203  Q
    |||||    
T  6372025 attgt 6372029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 7277547 - 7277443
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||| ||||||||||||| |  || |||||||| || |||||| || | |||||| | || ||||||||||  ||||||||||| |||||||    
T  7277547 acatttataagcgaaaaacgactttttaagtttattgaataactcatgtatctgatctatataaaagtcagatacattagttattcaatgaacctaaaaa 7277448  T
Q  199 attgt 203  Q
     ||||    
T  7277447 gttgt 7277443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 47493212 - 47493270
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata 159  Q
    ||||||||| ||||||| |||||| ||||| |||||||||||||||||| |||| ||||    
T  47493212 atttataagtaaaaaactactttttagatttattgaatacctaatgtatttggtctata 47493270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 51313469 - 51313575
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaat 191  Q
    |||||| |||||||||| ||||||   |||||| || |||||||||||| |||||||| | || ||||||| |   | ||||||||| |||| |||||||    
T  51313469 tccgatcacatttataaacaaaaatgtactttttagcttcattgaatacataatgtatttagtctatatattgaccaaatacattaagtattgaatgaat 51313568  T
Q  192 ctaaaaa 198  Q
    |||||||    
T  51313569 ctaaaaa 51313575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 199
Target Start/End: Original strand, 22295848 - 22295879
Alignment:
Q  168 agatacattaaatattcaatgaatctaaaaaa 199  Q
    ||||||||||||||||||||||||||||||||    
T  22295848 agatacattaaatattcaatgaatctaaaaaa 22295879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 51313577 - 51313498
Alignment:
Q  119 acttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||| ||||||||| ||||| |||||||| ||||  ||||||||  || ||||||||  ||||||||||| |||||||    
T  51313577 actttttagattcattcaatacttaatgtatttggtcaatatatagactaaatacattatgtattcaatgaagctaaaaa 51313498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 32125467 - 32125409
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata 159  Q
    ||||||||||||||| | |||||| || ||||||||||| ||||||||| |||| ||||    
T  32125467 atttataagcaaaaatctactttttaggttcattgaatatctaatgtatgtggtctata 32125409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 38562135 - 38562240
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggtta---gatacattaaatattcaatgaatctaa 195  Q
    ||||||||||||||||||| |||| | |||| |||||||||  |||||||||||   |||| ||  || |   |||||||||| ||||||||| ||||||    
T  38562135 acatttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaat--gtgaccggatacattaattattcaatgtatctaa 38562232  T
Q  196 aaaattgt 203  Q
    ||||||||    
T  38562233 aaaattgt 38562240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 20291920 - 20291863
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    |||||| | ||||||||||||||||  |||||| ||||| |||||||| |||||||||    
T  20291920 tccgatcatatttataagcaaaaaataactttttagatttattgaataactaatgtat 20291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 25063514 - 25063453
Alignment:
Q  136 aatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaa 197  Q
    ||||| |||| |||||||| ||||||||||| | ||||||||  |||||||||||| |||||    
T  25063514 aatacgtaatatatatggtctatatataggtaaaatacattagctattcaatgaatataaaa 25063453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 25129820 - 25129716
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata-tataggttagatacattaaatattcaatgaatctaaaa 197  Q
    |||||||||| |||||||| | |||| ||||| |||||||| ||||| ||| || | |||| ||| | ||| |||||||| |||||||||||| ||||||    
T  25129820 acatttataatcaaaaaacaaatttt-agatttattgaatatctaatatatttgatctataatattgattaaatacattagatattcaatgaaactaaaa 25129722  T
Q  198 aattgt 203  Q
     |||||    
T  25129721 tattgt 25129716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 27990282 - 27990342
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata 159  Q
    ||||||||||||||||||  | |||| ||||||||||||||||  |||||| |||| ||||    
T  27990282 acatttataagcaaaaaattagtttttagattcattgaataccctatgtatttggtatata 27990342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 48601216 - 48601136
Alignment:
Q  121 ttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaaatt 201  Q
    |||| |||||||||||||| ||||| |||  | | || |||||||| ||||||||||  |||||||| ||| |||||||||    
T  48601216 tttttagattcattgaataactaatttattcgatttacatataggtcagatacattagttattcaataaatataaaaaatt 48601136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 7055696 - 7055588
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaat 191  Q
    |||||| |||||||||||||||||   |||||| || |||||||||||| |||| ||| || | ||||||| |   | ||||||||| |||| |||||||    
T  7055696 tccgatcacatttataagcaaaaatgtactttttaggttcattgaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 7055597  T
Q  192 ctaaaaaat 200  Q
    |||||||||    
T  7055596 ctaaaaaat 7055588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 2271264 - 2271206
Alignment:
Q  91 atccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    ||||||| ||||||||||||||||||  |||||| |||||||||||| | |||||||||    
T  2271264 atccgatcacatttataagcaaaaaataactttttagattcattgaacaactaatgtat 2271206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 674181 - 674121
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtata 159  Q
    ||||||||||||||||||| | |||| |||||||||||||| ||||| ||| |||| ||||    
T  674181 acatttataagcaaaaaacaattttttagattcattgaataactaatatatttggtctata 674121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 862893 - 862933
Alignment:
Q  160 tataggttagatacattaaatattcaatgaatctaaaaaat 200  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  862893 tataggttagatacattaattattcaatgtatctaaaaaat 862933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 26478575 - 26478523
Alignment:
Q  97 ttacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    |||||||||||||||||| || |||||| || || ||||||||||||||||||    
T  26478575 ttacatttataagcaaaacactactttttaggtttattgaatacctaatgtat 26478523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 3846561 - 3846459
Alignment:
Q  100 catttataagcaaaaaacga-cttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    |||||||||||||||||  | ||||| |  |||||| |||| |||||||||  ||| ||||||||||| | ||||||||  |||||||||||  ||||||    
T  3846561 catttataagcaaaaaaataactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattatttattcaatgaacttaaaaa 3846462  T
Q  199 att 201  Q
    |||    
T  3846461 att 3846459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 5069949 - 5069999
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    ||||||||||||||||||| |||||| |||| |||||||||  ||||||||    
T  5069949 acatttataagcaaaaaacaactttttagatacattgaataattaatgtat 5069999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 20703505 - 20703432
Alignment:
Q  129 ttcattgaatacctaatgtatatggtgtatat-ataggttagatacattaaatattcaatgaatctaaaaaatt 201  Q
    |||||||||||  |||||||| |||| ||||| ||||   | ||||||||||||||||||||| ||||||||||    
T  20703505 ttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaaaatt 20703432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 33853967 - 33853861
Alignment:
Q  92 tccgattacatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaat 191  Q
    |||||| ||||||||||||||||||  |||||| ||||||||| ||||| |||| ||| ||||  |||||||    | ||||||||  |||||||||||     
T  33853967 tccgatcacatttataagcaaaaaagcacttttcagattcattcaatacttaatttatttggtcaatatataaaccaaatacattatgtattcaatgaac 33853868  T
Q  192 ctaaaaa 198  Q
    |||||||    
T  33853867 ctaaaaa 33853861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 31719190 - 31719255
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatatag 164  Q
    ||||||||||| ||||||| |||||| |||||||||||||| | ||||||| |||  |||||||||    
T  31719190 acatttataagtaaaaaacaactttttagattcattgaataacaaatgtatttggactatatatag 31719255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 30429198 - 30429095
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||  | | || || || |||||||| ||||||||| | || |||||| |||| ||||||||||| |||| |||||| |||||||    
T  30429198 acatttataagcaaaaaaa-attgtttaggtttattgaataactaatgtatctagtctatataaaggtcagatacattaattattgaatgaacctaaaaa 30429100  T
Q  199 attgt 203  Q
     ||||    
T  30429099 gttgt 30429095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 30429078 - 30429180
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||| |||||| || |||||| ||||  |||||||| ||   | |||||||  |||||||||||  |||||||| || ||||| |    
T  30429078 acatttataagcaaaaaacaactttttaggttcattcaataattaatgtatctgacctttatatagactagatacattagttattcaataaacctaaaca 30429177  T
Q  199 att 201  Q
    |||    
T  30429178 att 30429180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 9113998 - 9114031
Alignment:
Q  167 tagatacattaaatattcaatgaatctaaaaaat 200  Q
    |||||||||||| |||||||||||||||||||||    
T  9113998 tagatacattaattattcaatgaatctaaaaaat 9114031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 41120028 - 41119983
Alignment:
Q  155 gtatatataggttagatacattaaatattcaatgaatctaaaaaat 200  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||    
T  41120028 gtatatataaattagatacgttaattattcaatgaatctaaaaaat 41119983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 41221758 - 41221661
Alignment:
Q  101 atttataagcaaaaaacgacttttgagattcattgaatacctaatgtatatggtgtatatataggttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||| ||||||  | |||| || ||||||||||| |||||||||  ||| |||||  | || ||||||||||| |||| |||||||| |||||    
T  41221758 atttataagtaaaaaataaatttttaggttcattgaataactaatgtatccggtctatatgaaagtcagatacattaattattaaatgaatccaaaaa 41221661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 10495721 - 10495753
Alignment:
Q  166 ttagatacattaaatattcaatgaatctaaaaa 198  Q
    ||||||||||||||||||||||| |||||||||    
T  10495721 ttagatacattaaatattcaatgtatctaaaaa 10495753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 5829 - 5879
Alignment:
Q  99 acatttataagcaaaaaacgacttttgagattcattgaatacctaatgtat 149  Q
    |||||||||||||||||| ||||||| || | ||||||||| |||||||||    
T  5829 acatttataagcaaaaaatgactttttaggtacattgaataactaatgtat 5879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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