View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11441_low_3 (Length: 374)
Name: NF11441_low_3
Description: NF11441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11441_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 39703931 - 39704278
Alignment:
| Q |
19 |
aaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaactc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39703931 |
aaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttggaatcctaccactatggagttcaagtatattcttagcaactc |
39704030 |
T |
|
| Q |
119 |
caatagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcgctcattaggaccccatttcaaaatcccagctggttctgtttctgttat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39704031 |
caatagcaatccaaagtagtgtgacggtacttcaagctttagccatggatcgctcattaggaccccatttcaaaattccagctggttctgtttctgttat |
39704130 |
T |
|
| Q |
219 |
agtcctaatatcaacatccattttcctcacctttcttgacagagtgttattgccaggttggcataagattactggaaaaacgcctatgccgcttcaacga |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39704131 |
agtcataatatcaacatccattttcctcacctttcttgacagagtgctattgccatgttggcataagattactggaaaaacgcctatgccacttcaacga |
39704230 |
T |
|
| Q |
319 |
ataggagtaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704231 |
ataggagtaggacatgtgttgactgttcttggcatggttgtctctgct |
39704278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 39695018 - 39695366
Alignment:
| Q |
18 |
aaaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaact |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||| | ||| |||||||||||||||||||||| |
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| T |
39695018 |
aaaatcatcatggagactatgcacagttcaacaagtggatgatttcaaaaaaataattggaatcctaccattgtggtcttcaagtatattcttagcaact |
39695117 |
T |
|
| Q |
118 |
ccaatagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcgctcattaggaccccatttcaaaatcccagctggttctgtttctgtta |
217 |
Q |
| |
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|||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
39695118 |
ccaatagcaatccaaagttgcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgtta |
39695217 |
T |
|
| Q |
218 |
tagtcctaatatcaacatccattttcctcacctttcttgacagagtgttattgccaggttggcataagattactggaaaaacgcctatgccgcttcaacg |
317 |
Q |
| |
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||||| | |||||| || ||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||| | |||| |||||||||||| ||||| |
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| T |
39695218 |
tagtcttgatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcctatgccgctccaacg |
39695317 |
T |
|
| Q |
318 |
aataggagtaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39695318 |
aataggagcaggacatgtgttgactgttcttggcatggttgtctctgct |
39695366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 96 - 366
Target Start/End: Complemental strand, 39935019 - 39934749
Alignment:
| Q |
96 |
ttcaagtatattcttagcaactccaatagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcgctcattaggaccccatttcaaaatc |
195 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
39935019 |
ttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatc |
39934920 |
T |
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| Q |
196 |
ccagctggttctgtttctgttatagtcctaatatcaacatccattttcctcacctttcttgacagagtgttattgccaggttggcataagattactggaa |
295 |
Q |
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|
|||||| ||| |||||||||||| ||| |||||||| || ||||||| ||||| ||||||||||| ||| | |||||| |||||||||||||||| || | |
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| T |
39934919 |
ccagctagttttgtttctgttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggca |
39934820 |
T |
|
| Q |
296 |
aaacgcctatgccgcttcaacgaataggagtaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
| |
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|| | | ||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39934819 |
aatcacttatgccgctccagcgaataggagcaggacatgtgttgactgttcttggcatggttgtctctgct |
39934749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 39929444 - 39929097
Alignment:
| Q |
19 |
aaatcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaactc |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| ||| ||| ||||| |||||| ||||||| ||||| || ||| || |
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| T |
39929444 |
aaatcatcatggagactatgcacaattcaacaagtggaagatttcaaaaaaatagttggaatattaccattatggacttcaagtctattcctatcaattc |
39929345 |
T |
|
| Q |
119 |
caatagcaatccaaa-gtagtgtgacggtacttcaagctttagtcatggatcgctcattaggaccccatttcaaaatcccagctggttctgtttctgtta |
217 |
Q |
| |
|
|||||| ||| |||| | | | | | ||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
39929344 |
caatagtaatgcaaatggact-tcattatacttcaagctttagtcatggatcgttctttaggataccattttgaaatcccagctggttctatttctgtta |
39929246 |
T |
|
| Q |
218 |
tagtcctaatatcaacatccattttcctcacctttcttgacagagtgttattgccaggttggcataagattactggaaaaacgcctatgccgcttcaacg |
317 |
Q |
| |
|
||||| |||||||| || ||||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||| ||||| | |||| || ||| || | |
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| T |
39929245 |
tagtcttaatatcagcacccattttcctcacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagctgctccatca |
39929146 |
T |
|
| Q |
318 |
aataggagtaggacatgtgttgactgttcttggcatggttgtctctgct |
366 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||||||| |
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|
| T |
39929145 |
aataggagtaggacatgtgttcaatgttcttggcatggtggtctctgct |
39929097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 38062122 - 38061778
Alignment:
| Q |
22 |
tcatcatggaaactatgcacagttcaacaagtggaagatttcaaaaagatatttgcaatcctaccactatggagttcaagtatattcttagcaactccaa |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||||| | ||| ||||| |
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|
| T |
38062122 |
tcatcatggagactatgcacagttcaacaagtggaagatttcaaaaaaataattggaatattaccactatggacttcaagtctattcctttcaattccaa |
38062023 |
T |
|
| Q |
122 |
tagcaatccaaagtagtgtgacggtacttcaagctttagtcatggatcgctcattaggaccccatttcaaaatcccagctggttctgtttctgttat--- |
218 |
Q |
| |
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||| || | | | | | | |||||||||| |||| |||||||||| || ||||| | ||||| ||||||||||||||||||||||||||||| |
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|
| T |
38062022 |
tagtaaccgagaatttcttcattgtacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattat |
38061923 |
T |
|
| Q |
219 |
agtcctaatatcaacatccattttcctcacctttcttgacagagtgttattgccaggttggcataagattactg-gaaaaacgcctatgccgcttcaacg |
317 |
Q |
| |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| || | ||||| |||||||||||| ||||| |
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| T |
38061922 |
agtgttaatatcaacatctattttcctcacctttcttgacagagtgttattgccaggttggaatacgataaccgaaaaaaaagcctatgccgctccaacg |
38061823 |
T |
|
| Q |
318 |
aataggagtaggacatgtgttgactgttcttggcatggttgtctc |
362 |
Q |
| |
|
|||||||||||| |||||||||| |||| || ||||||||||| |
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|
| T |
38061822 |
aataggagtaggctatgtgttgaccattctgggtatggttgtctc |
38061778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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