View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11441_low_5 (Length: 289)
Name: NF11441_low_5
Description: NF11441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11441_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 122 - 271
Target Start/End: Complemental strand, 34721565 - 34721416
Alignment:
| Q |
122 |
tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa |
221 |
Q |
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| T |
34721565 |
tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa |
34721466 |
T |
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| Q |
222 |
gtttgggaacaagacaatggccaagtttctttacaacaacagcttgttta |
271 |
Q |
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| T |
34721465 |
gtttgggaacaagacaatggccaagtttctttacaacaacagcttgttta |
34721416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 34727989 - 34727740
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
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| T |
34727989 |
acagacttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaacaatcaagaatcaaaagaccctttactgc |
34727890 |
T |
|
| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
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| T |
34727889 |
ttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcctcctaaa |
34727790 |
T |
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| Q |
212 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
261 |
Q |
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| T |
34727789 |
tgtcagggaagtttgggaacaagataatggtgtagtttctctacaacaac |
34727740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 18928737 - 18928986
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
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| T |
18928737 |
acagaattattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaactattgaactgtcacgaatcaaaagaccctttactgc |
18928836 |
T |
|
| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
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| T |
18928837 |
ttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcctcctaaa |
18928936 |
T |
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| Q |
212 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
261 |
Q |
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| T |
18928937 |
tgtcagggaagattgggaacacgataatgggcaggtttctctacaacaac |
18928986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 34716114 - 34715852
Alignment:
| Q |
16 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgcttgg |
115 |
Q |
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||||||| ||||| |||||||| || ||||| |||||||||| |||||| |||||| | ||| | | | ||| |||| || |||| |||||||||| |
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| T |
34716114 |
acttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaactactaaaatcccgacaatcagaagatcctgtactgcttgg |
34716015 |
T |
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| Q |
116 |
gatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtc---actcttttaactaagggaatttcctcctaaat |
212 |
Q |
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| T |
34716014 |
gatatggggcggaggagggatcggtaaaacaacaattgccaaagcagtttataatgaaatccatcgccaccattttgaggcaaggagcttcctcttaaat |
34715915 |
T |
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| Q |
213 |
gtcggggaagtttgggaacaagacaatggccaagtttctttacaacaacagcttgtttatgtt |
275 |
Q |
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| T |
34715914 |
gtcggtgaagtttggaaacaagataatggcgaagtttctttacaaaaacaacttatttctgtt |
34715852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 34730959 - 34730898
Alignment:
| Q |
200 |
tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
261 |
Q |
| |
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| T |
34730959 |
tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttctctacaacaac |
34730898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 34717871 - 34717711
Alignment:
| Q |
13 |
cagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgct |
112 |
Q |
| |
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|||||||||| |||| |||||||| || | ||| |||||| ||| ||||||||||||| | || || ||||| |||| ||| || |||||||| | |
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| T |
34717871 |
cagacttatttgttgtggaccatccagtcgaggttgaatcttgtgtacaagatgttatttaacttctgaacagccaacaatcaaaagactctctactgat |
34717772 |
T |
|
| Q |
113 |
tgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa |
173 |
Q |
| |
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||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||||| |
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| T |
34717771 |
tgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa |
34717711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 18924027 - 18924081
Alignment:
| Q |
208 |
taaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaaca |
262 |
Q |
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|||||||| || |||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
18924027 |
taaatgtccggcaagtttgggaacaagataatggcgaagtttctttacaacaaca |
18924081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 34735746 - 34735496
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
| |
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||||||||||| ||||| ||||||||||| |||||| | ||||||| |||||| | ||| | |||||| |||| || | ||| | ||| |||||| |
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| T |
34735746 |
acagacttatttgttgcggaccatccggtgggggtaaagtctcgtgttcaagatatcattcaactattgaacagtcaagaatcaaaatcccctttactgc |
34735647 |
T |
|
| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
| |
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| || |||| ||| |||||||||||| |||||||| ||||||||| | ||||||||||| | | |||| |||| | || |||||||| ||| |
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| T |
34735646 |
tcggagtatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcatcacgattttgaggcgaagagtttcctcccaaa |
34735547 |
T |
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| Q |
212 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaaca |
262 |
Q |
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|||| ||||||| ||||||||||| |||||| ||||||| |||||||||| |
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| T |
34735546 |
tgtcagggaagtctgggaacaagataatggcgtagtttctctacaacaaca |
34735496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 18923835 - 18923890
Alignment:
| Q |
16 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttatt |
71 |
Q |
| |
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||||||||||||| |||||||| || ||||| |||||||||| |||||| |||||| |
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| T |
18923835 |
acttattcgttgcggaccatcctgtgggggttgaatctcgtgtacaagaggttatt |
18923890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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