View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11441_low_6 (Length: 246)
Name: NF11441_low_6
Description: NF11441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11441_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 16901879 - 16901671
Alignment:
| Q |
20 |
ccttgtggctttgctgactgtgatgctgacaatgcttgcaacttgcaatagataagcatgcaaaaggttaccttaacaatctatctatctgtcattactc |
119 |
Q |
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| T |
16901879 |
ccttgtggttttgctgactgtgatgctgacaatgcctgcaacttgcaatagataagcatgcaaaaggttaccttaacaatctatctatctgtctttagtc |
16901780 |
T |
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| Q |
120 |
ttacaacaacattaaagtataacattgcatgcagttttgtactttatacaacacaatccacttaatcatgttttcatcaacaactaaatcatatacttca |
219 |
Q |
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| T |
16901779 |
-tacaacaacattaaagtataacattgcatgcagttttgtactttatacaacacaatcc-cttaatcatgttttcatcaacaactaagtcttatacttca |
16901682 |
T |
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| Q |
220 |
tcacctttcat |
230 |
Q |
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||||||||||| |
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| T |
16901681 |
tcacctttcat |
16901671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 16898859 - 16898792
Alignment:
| Q |
166 |
tacaacacaatccacttaatcatgttttcatcaacaactaaatcatatacttcatcacctttcatctc |
233 |
Q |
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||||| ||||||||||||| |||||||| | | |||||||| || |||| |||||||||||||||||| |
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| T |
16898859 |
tacaaaacaatccacttaaccatgtttttaactacaactaagtcttatatttcatcacctttcatctc |
16898792 |
T |
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