View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11441_low_7 (Length: 244)

Name: NF11441_low_7
Description: NF11441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11441_low_7
NF11441_low_7
[»] scaffold0281 (4 HSPs)
scaffold0281 (151-226)||(11897-11972)
scaffold0281 (151-204)||(20425-20478)
scaffold0281 (1-52)||(11749-11800)
scaffold0281 (1-52)||(20277-20328)
[»] chr2 (2 HSPs)
chr2 (151-226)||(31862810-31862885)
chr2 (1-52)||(31862662-31862713)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-52)||(47509-47560)


Alignment Details
Target: scaffold0281 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 11897 - 11972
Alignment:
Q  151 tttatatctacgacctcttatctcatgttatttgttaattaaattccttcaaaccagtaacaatgggttatgtact 226  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  11897 tttatatctatgacctcttatctcatgttatttgttaattaaattccttcaaacaagtaacaatgggttctgtact 11972  T

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Target: scaffold0281; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 20425 - 20478
Alignment:
Q  151 tttatatctacgacctcttatctcatgttatttgttaattaaattccttcaaac 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20425 tttatatctatgacctcttatctcatgttatttgttaattaaattccttcaaac 20478  T

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Target: scaffold0281; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11749 - 11800
Alignment:
Q  1 aatgttggagtgcggcttccatataccaccaatcgggaggaagcgctctcta 52  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11749 aatgttggagtgcggcttccatataccaccaatcggcaggaagcgctctcta 11800  T

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Target: scaffold0281; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20277 - 20328
Alignment:
Q  1 aatgttggagtgcggcttccatataccaccaatcgggaggaagcgctctcta 52  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20277 aatgttggagtgcggcttccatataccaccaatcggcaggaagcgctctcta 20328  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 31862810 - 31862885
Alignment:
Q  151 tttatatctacgacctcttatctcatgttatttgttaattaaattccttcaaaccagtaacaatgggttatgtact 226  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  31862810 tttatatctatgacctcttattccatgttatttgttaattaaattcattcaaacaagtaacaatgggttctgtact 31862885  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31862662 - 31862713
Alignment:
Q  1 aatgttggagtgcggcttccatataccaccaatcgggaggaagcgctctcta 52  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  31862662 aatgttggagtgtggcttccatataccaccaatcggcaggaagcgctctcta 31862713  T

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Target: scaffold0036 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47560 - 47509
Alignment:
Q  1 aatgttggagtgcggcttccatataccaccaatcgggaggaagcgctctcta 52  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47560 aatgttggagtgcggcttccatataccaccaatcggcaggaagcgctctcta 47509  T

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