View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11442_low_2 (Length: 473)
Name: NF11442_low_2
Description: NF11442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11442_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 253 - 460
Target Start/End: Complemental strand, 48857153 - 48856950
Alignment:
| Q |
253 |
gcaagaaacagaccaacatttatttatttatagacacgacgacatgaaatgttgctgagccaaaacctcaacttctggccacgtcatgatatcaccggag |
352 |
Q |
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| T |
48857153 |
gcaagaaacagaccaac----gtttatttatagacacgacgacatgaaatgttgctgcgccaaaacctcaacttctggccacgtcatgatatcaccggag |
48857058 |
T |
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| Q |
353 |
caactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaag |
452 |
Q |
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| T |
48857057 |
caactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaag |
48856958 |
T |
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| Q |
453 |
ccttcatc |
460 |
Q |
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|||||||| |
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| T |
48856957 |
ccttcatc |
48856950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 48857381 - 48857234
Alignment:
| Q |
18 |
tgatcattagatcaaaccttcatagaagctgtccatgcttatttttagaaaaggaaagaaagnnnnnnnnncatgttcatattacgcattagttaaatta |
117 |
Q |
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| T |
48857381 |
tgatcattagatcaaaccttcatagaagctgtccatgcttatttttagaaaaggaaaaaaaaaa--------atgttcatattatgcattagttaaatta |
48857290 |
T |
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| Q |
118 |
aggaaaatattgtaacttattagttacttaa--gggggagaaagaaaaagagtttt |
171 |
Q |
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| T |
48857289 |
aggaaaatattgtaacttattagttacttaaaggggggagaaagaaaaagagtttt |
48857234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 9776314 - 9776348
Alignment:
| Q |
380 |
agctccggcaattcaatctcaccccaaaaatcatc |
414 |
Q |
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| T |
9776314 |
agctccggcaactcaatctcaccccaaaaatcatc |
9776348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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