View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11442_low_3 (Length: 264)
Name: NF11442_low_3
Description: NF11442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11442_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 473259 - 473410
Alignment:
| Q |
1 |
aaatgaaacaatttcgatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaa |
100 |
Q |
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| T |
473259 |
aaatgaaacaatttagatgagagttgttgggaattagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaa |
473358 |
T |
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| Q |
101 |
tggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaa |
152 |
Q |
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| T |
473359 |
tggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaa |
473410 |
T |
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Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 41521352 - 41521186
Alignment:
| Q |
1 |
aaatgaaacaatttcgatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaa |
100 |
Q |
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| T |
41521352 |
aaatgaaacaatttagatgagacttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaag--------------tatttttagaaaa |
41521267 |
T |
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| Q |
101 |
tggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcatatcg |
181 |
Q |
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| T |
41521266 |
tggtgaaatcaaaagatgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcatatcg |
41521186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 1242712 - 1242869
Alignment:
| Q |
16 |
gatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaatcaaaag |
115 |
Q |
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||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
1242712 |
gatgagacttgttgggaagtagtaaaatgg------ggtagaagaacaaaagctgaagcggtggtcgaaaagtatttttagaaaatggtgaaattaaaaa |
1242805 |
T |
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| Q |
116 |
a-tgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcata |
178 |
Q |
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| T |
1242806 |
aatgaatgagttgaaaagtctaagtacaattaccaaaagaattttctattaaatacttttcata |
1242869 |
T |
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