View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11442_low_5 (Length: 242)

Name: NF11442_low_5
Description: NF11442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11442_low_5
NF11442_low_5
[»] chr2 (4 HSPs)
chr2 (18-242)||(43489586-43489810)
chr2 (56-141)||(43199351-43199437)
chr2 (56-116)||(4026779-4026840)
chr2 (55-87)||(43985049-43985081)
[»] chr4 (4 HSPs)
chr4 (55-116)||(49219101-49219163)
chr4 (95-149)||(54325124-54325178)
chr4 (55-110)||(2996541-2996597)
chr4 (57-116)||(17884030-17884090)
[»] scaffold0024 (1 HSPs)
scaffold0024 (55-110)||(27544-27600)
[»] chr6 (3 HSPs)
chr6 (55-115)||(2112164-2112224)
chr6 (56-126)||(20671912-20671983)
chr6 (57-110)||(31776323-31776377)
[»] chr7 (3 HSPs)
chr7 (55-116)||(30456496-30456558)
chr7 (59-116)||(30496666-30496724)
chr7 (56-115)||(31338471-31338531)
[»] chr1 (2 HSPs)
chr1 (57-134)||(6981436-6981514)
chr1 (57-116)||(37517242-37517302)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 43489810 - 43489586
Alignment:
Q  18 agttatgacatatccataagcttatttcaaactttggagatagtttatgaaaacaacttataatttatacaaacaaatttgactttattttatattttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43489810 agttatgacatatccataagcttatttcaaactttggagatagtttatgaaaacagcttataatttatacaaacaaatttgactttattttatattttga 43489711  T
Q  118 actagaaattatttatacacaagcaattatatagacacttaattaaggtgttgttcaaacatgaccttagggcttagaccatataactatgaaacatgaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  43489710 actagaaattatttatacacaagcaattatatagacacttaattaaggtgttattcaaacatgaccttagggcttagaccatatatctatgaaacatgaa 43489611  T
Q  218 actctccacacgcatgtatgtggtt 242  Q
    |||||||||||||||||||||||||    
T  43489610 actctccacacgcatgtatgtggtt 43489586  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 43199437 - 43199351
Alignment:
Q  56 gatagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttatattttgaactagaaattatttatacacaagc 141  Q
    ||||||||||||||||||||||||  |||||| || | ||||| |||||||||||| |||||   ||||||| | ||||||| ||||    
T  43199437 gatagtttatgaaaacaacttatagcttatacgaagataatttaactttattttatcttttgttgtagaaataacttatacagaagc 43199351  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 4026840 - 4026779
Alignment:
Q  56 gatagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttatattttg 116  Q
    |||| |||||||||||| |||||||||||| |||| | ||||| |||||||||||| |||||    
T  4026840 gataatttatgaaaacagcttataatttatgcaaaaataatttaactttattttatcttttg 4026779  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 43985049 - 43985081
Alignment:
Q  55 agatagtttatgaaaacaacttataatttatac 87  Q
    |||||| ||||||||||||||||||||||||||    
T  43985049 agatagcttatgaaaacaacttataatttatac 43985081  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 49219163 - 49219101
Alignment:
Q  55 agatagtttatgaaaacaacttataatttata-caaacaaatttgactttattttatattttg 116  Q
    |||||||||||||||||||||||||  |||||  |||  ||||||||||||||||||||||||    
T  49219163 agatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttg 49219101  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 54325124 - 54325178
Alignment:
Q  95 tttgactttattttatattttgaactagaaattatttatacacaagcaattatat 149  Q
    |||||||||||||||| ||||| | |||||||  |||||||||||||| ||||||    
T  54325124 tttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatat 54325178  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 2996597 - 2996541
Alignment:
Q  55 agatagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttat 110  Q
    |||||| ||||||||||||||||||| ||||| ||| | ||||||||| ||||||||    
T  2996597 agatagcttatgaaaacaacttataacttatataaaaacaatttgactgtattttat 2996541  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 17884090 - 17884030
Alignment:
Q  57 atagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttatattttg 116  Q
    |||| |||||||||||||| |||| ||||||||| | ||||| |||||||||||| |||||    
T  17884090 atagcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatcttttg 17884030  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 27600 - 27544
Alignment:
Q  55 agatagtttatgaaaacaacttataatttata-caaacaaatttgactttattttat 110  Q
    ||||||||||||||||||||||||| ||||||  |||  ||||||||||||||||||    
T  27600 agatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttat 27544  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 2112224 - 2112164
Alignment:
Q  55 agatagtttatgaaaacaacttataatttatacaaacaaatttgactttattttatatttt 115  Q
    ||||||||||||||||||||||||| ||||||  ||  ||||| |||||||||||| ||||    
T  2112224 agatagtttatgaaaacaacttatagtttatatgaaacaatttaactttattttatctttt 2112164  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 20671912 - 20671983
Alignment:
Q  56 gatagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttatattttgaactagaaat 126  Q
    |||||||||||||||||| ||| |  |||||| || | |||||||||||||||||| |||||| ||||||||    
T  20671912 gatagtttatgaaaacaatttaaagcttatacgaaaacaatttgactttattttatcttttgatctagaaat 20671983  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 31776323 - 31776377
Alignment:
Q  57 atagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttat 110  Q
    |||| ||||||||||||||||| | ||||||||| | ||||||||||||||||||    
T  31776323 atagcttatgaaaacaacttattaattatacaaaaacaatttgactttattttat 31776377  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 30456496 - 30456558
Alignment:
Q  55 agatagtttatgaaaacaacttataatttata-caaacaaatttgactttattttatattttg 116  Q
    ||||||||||||||||| |||||||| |||||  |||  |||||||||||||||||| |||||    
T  30456496 agatagtttatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttg 30456558  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 30496724 - 30496666
Alignment:
Q  59 agtttatgaaaacaacttataatttatacaaaca-aatttgactttattttatattttg 116  Q
    |||||||||||||||| ||||  |||||| || | ||||||||||||||||||||||||    
T  30496724 agtttatgaaaacaacctataggttatacgaaaacaatttgactttattttatattttg 30496666  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 31338531 - 31338471
Alignment:
Q  56 gatagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttatatttt 115  Q
    ||||||||||| ||||||||||||| ||||| ||| | | |||||||||||||||| ||||    
T  31338531 gatagtttatggaaacaacttataacttatataaaaacagtttgactttattttatctttt 31338471  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 6981514 - 6981436
Alignment:
Q  57 atagtttatgaaaacaacttataatttata-caaacaaatttgactttattttatattttgaactagaaattatttata 134  Q
    |||| ||| |||| || ||||||||||||| ||||||||||||||||| |||||| |||||   ||||||| |||||||    
T  6981514 atagcttaggaaatcagcttataatttatatcaaacaaatttgactttgttttattttttgttatagaaataatttata 6981436  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 37517242 - 37517302
Alignment:
Q  57 atagtttatgaaaacaacttataatttatacaaaca-aatttgactttattttatattttg 116  Q
    |||| |||| |||| |||||||||| |||||||| | ||||| ||||||||||||||||||    
T  37517242 atagcttattaaaataacttataatatatacaaaaacaatttaactttattttatattttg 37517302  T

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