View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11442_low_6 (Length: 238)
Name: NF11442_low_6
Description: NF11442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11442_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40283653 - 40283876
Alignment:
| Q |
1 |
tctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaaaaggttttgccaatcttttacaaaatagaaccgtccgatg |
100 |
Q |
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| T |
40283653 |
tctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaaaaggttttgccaatcttttacaaaatagaaccgtccgatg |
40283752 |
T |
|
| Q |
101 |
taaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttggaaatgactctgagaaggtaaaggaatggaggtcagctttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40283753 |
taaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttggaaatgactctgagaaggtaaaggaatggaggtcagctttatc |
40283852 |
T |
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| Q |
201 |
tgaagttgctaacttgaaaggaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40283853 |
tgaagttgctaacttgaaaggaat |
40283876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 40311305 - 40311517
Alignment:
| Q |
5 |
cttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaaaaggttttgccaatcttttacaaaatagaaccgtccgatgtaag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || ||||| ||||||||||||||||||||||| |
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| T |
40311305 |
cttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttgccgattttttataaaatagaaccgtccgatgtaag |
40311404 |
T |
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| Q |
105 |
gcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttggaaatgactctgagaaggtaaaggaatggaggtcagctttatctgaa |
204 |
Q |
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| T |
40311405 |
gcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttgagaagttacagatatggaggtcagctttacttgaa |
40311504 |
T |
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| Q |
205 |
gttgctaacttga |
217 |
Q |
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||||||| ||||| |
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| T |
40311505 |
gttgctagcttga |
40311517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 40326581 - 40326797
Alignment:
| Q |
1 |
tctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaaaaggttttgccaatcttttacaaaatagaaccgtccgatg |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||| || ||||| || ||| |||||||||| || |||||||||||||||||||||||||||| || | |
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| T |
40326581 |
tctccctggtgtctagatgaattggtcactatgctaaagtgcaaggagaggaagaaccaacagattttgccaatcttttacaaaatagaaccatcttggg |
40326680 |
T |
|
| Q |
101 |
taaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttggaaatgactctgagaaggtaaaggaatggaggtcagctttatc |
200 |
Q |
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|||| ||||||| ||| || ||| || ||||||| |||||||| || |||||||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
40326681 |
taagacatcagagaaatagttatggaaaagccatgactaagcatgaagaagagtttggaaatgactctgaaaaggtgaataaatggaggtcagctttatg |
40326780 |
T |
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| Q |
201 |
tgaagttgctaacttga |
217 |
Q |
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||||||||||||||||| |
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| T |
40326781 |
tgaagttgctaacttga |
40326797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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