View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11443_low_1 (Length: 692)
Name: NF11443_low_1
Description: NF11443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11443_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Original strand, 180620 - 181280
Alignment:
| Q |
18 |
ctcagtaccatggatccactactcgtgggtctaactatcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
180620 |
ctcagtaccatggatccactactcgtgggtctaactatcgtggtagaggtcgaggtttcaactcatgtggaaatagacttccaccaagatgtcaactctg |
180719 |
T |
|
| Q |
118 |
ctctttccttggccatattgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
180720 |
ctctttccttggccatattgctaagtaatgtcctccgctgcggcaacgcaacaatcaaccaatggcaaatttcgcttctacttcacattcggctgctcct |
180819 |
T |
|
| Q |
218 |
aactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattg |
317 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180820 |
aactgggtgttcgacactagagccagtcatcatataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattg |
180919 |
T |
|
| Q |
318 |
gtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgc |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
180920 |
gtgatggtacaggtttgaatatttcacatgttggctctattaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgc |
181019 |
T |
|
| Q |
418 |
taaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggg |
517 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181020 |
taaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggg |
181119 |
T |
|
| Q |
518 |
gtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccc |
617 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | |
|
|
| T |
181120 |
gtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcac |
181219 |
T |
|
| Q |
618 |
cttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181220 |
cttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
181280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 24 - 678
Target Start/End: Original strand, 1701053 - 1701707
Alignment:
| Q |
24 |
accatggatccactactcgtgggtctaactatcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctgctcttt |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1701053 |
accatggatccaatactcgtgggtctaactatcgtggtagaggtcgaggtttcaactcacgtggaaatagacctccaccaagatgtcaactctgctcttt |
1701152 |
T |
|
| Q |
124 |
ccttggccatattgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcctaactgg |
223 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1701153 |
gcttggccatattgctaagtattgtcctcagctgctacaacgcaacaatcaaccagtggcaaatttcgcttctgcttcacattcggctgctcctaactgg |
1701252 |
T |
|
| Q |
224 |
gtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatg |
323 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
1701253 |
gtgttcgacacaggagccagtcatcatataacatcaaatctgaacaatatgcagctgcactccgaatatgacggtccagaagaagttcagattggtgatg |
1701352 |
T |
|
| Q |
324 |
gtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaaca |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1701353 |
gtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaaca |
1701452 |
T |
|
| Q |
424 |
taatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacg |
523 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
1701453 |
taatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacg |
1701552 |
T |
|
| Q |
524 |
ttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttcta |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
1701553 |
ttgatgcgcggttcaagtaacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctt |
1701652 |
T |
|
| Q |
624 |
tatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
678 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1701653 |
tatggcatgctcgtttcggtcatccctctttcagagttcttgcacaaatgatgtc |
1701707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 213 - 351
Target Start/End: Complemental strand, 26593191 - 26593053
Alignment:
| Q |
213 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
312 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| |||| ||| | |||||||||| |||||||| ||||||| ||||||||||| || |||||||| || |
|
|
| T |
26593191 |
ctcctaattgggtgtttgatactggggccagccatcatatcagcacaaatctgaataatatgcacattcactctgaatatgatggcccagaagaagtgca |
26593092 |
T |
|
| Q |
313 |
gattggtgatggtacaggtttgaaaatttcacatgttgg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26593091 |
aattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 5399981 - 5400124
Alignment:
| Q |
213 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || ||||||||||||||||| |||||||| |
|
|
| T |
5399981 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtcccgaggaagttca |
5400080 |
T |
|
| Q |
313 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
356 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5400081 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 3540978 - 3541121
Alignment:
| Q |
213 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || |||||||||||||| || |||||||| |
|
|
| T |
3540978 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtccagaggaagttca |
3541077 |
T |
|
| Q |
313 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
356 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3541078 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University