View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11443_low_3 (Length: 362)
Name: NF11443_low_3
Description: NF11443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11443_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 121 - 355
Target Start/End: Complemental strand, 17184510 - 17184268
Alignment:
| Q |
121 |
aaatttgcaatcaacacaattttacattcacttctactgttctttccatatcattcatttcattaaaatataataattgaatggcaaggaactta----- |
215 |
Q |
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| T |
17184510 |
aaatttgcaattaacacaattttacattcacttccactgtt-tgtccatatcattcatctcattaaaatataataattgaatggcaaggaacttatgtat |
17184412 |
T |
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| Q |
216 |
----atttcgaccagtaaaattttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtctctgtaagacattttggt |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17184411 |
aagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtatctgtaagacattttggt |
17184312 |
T |
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| Q |
312 |
ttcaaaacttatagctgttcaaatgtactattgctttctctgct |
355 |
Q |
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| T |
17184311 |
ttcaaaacttatagctgttcaaatgtactattgctttccctgct |
17184268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 121 - 355
Target Start/End: Original strand, 17195896 - 17196138
Alignment:
| Q |
121 |
aaatttgcaatcaacacaattttacattcacttctactgttctttccatatcattcatttcattaaaatataataattgaatggcaaggaactta----- |
215 |
Q |
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| T |
17195896 |
aaatttgcaattaacacaattttacattcacttccactgtt-tgtccatatcattcatctcattaaaatataataattgaatggcaaggaacttatgtat |
17195994 |
T |
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| Q |
216 |
----atttcgaccagtaaaattttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtctctgtaagacattttggt |
311 |
Q |
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| T |
17195995 |
aagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtcactgtaggacattttggt |
17196094 |
T |
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| Q |
312 |
ttcaaaacttatagctgttcaaatgtactattgctttctctgct |
355 |
Q |
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| T |
17196095 |
ttcaagacttatagctgttcaaatgtactattgctttccctgct |
17196138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 17184627 - 17184556
Alignment:
| Q |
22 |
ctactttatatctgttaatgttgatgtgtcgttggttaaggttttttgttgccagctatattgtttgggttg |
93 |
Q |
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| T |
17184627 |
ctactttatatctgttaatgttgatgtgtcgttggttaaggttttttgttgccagccagattgtttgggttg |
17184556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 17195819 - 17195854
Alignment:
| Q |
22 |
ctactttatatctgttaatgttgatgtgtcgttggt |
57 |
Q |
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| T |
17195819 |
ctactttatatctgttaatgttgatgtgtcgttggt |
17195854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 17193229 - 17193267
Alignment:
| Q |
309 |
ggtttcaaaacttatagctgttcaaatgtactattgctt |
347 |
Q |
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| T |
17193229 |
ggtttcaaaacttatagctgtccaaatgtactattgctt |
17193267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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