View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11444_high_2 (Length: 435)
Name: NF11444_high_2
Description: NF11444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11444_high_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 82 - 435
Target Start/End: Complemental strand, 43603349 - 43602984
Alignment:
| Q |
82 |
aatgaaaaaccacttaaccttcgttctacccatattcactttctttaaatcaaccaatgtt-aatattgttagtttttatggtg----agaatggagatc |
176 |
Q |
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| T |
43603349 |
aatgaaaaaccacttaaccttcgttctacacatattcactttctttaaatcaaccaatgtttaatattgttagtttttatggtgggtgagaatggagatc |
43603250 |
T |
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| Q |
177 |
aaacatttaacctctcatcacttcacttcttaactctta-------caccccatgcacaaattaaaaactttacaacccttgtgaaaaataatttcccca |
269 |
Q |
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| T |
43603249 |
aaacatttaacctctcatcacttcacttcttaactcttaactcttacaccccatgcacaaattaaaaactttactacccttatgaaaaataatttcccca |
43603150 |
T |
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| Q |
270 |
taagtcataacttctccatcaataaaattgaactccaccgtgcaatggtctcacttatattacaaattaaaaatatgcatataaccggtgataaacattg |
369 |
Q |
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| T |
43603149 |
taagtcataacttctccatcaataaaattgaactccaccgtgcaatggtctcacttatattacaaattaaaaatatgcatataaccggtgataaacattg |
43603050 |
T |
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| Q |
370 |
cataaacaaaaagaagaatcagactataggctaagtaatatgaagaaaaagagatgcaaacattgc |
435 |
Q |
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| T |
43603049 |
cataaacaaaaagaagaatcagactataggctaagtaatatgaagaaaaagagatgcaaacattgc |
43602984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 43603430 - 43603374
Alignment:
| Q |
28 |
aagtggagggtaattaacccttgagcaaatatttcaga-ggttcgcacattactcaa |
83 |
Q |
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| T |
43603430 |
aagtggagggtaattaacccttgagcaaatatttcagagggttcgcacattactcaa |
43603374 |
T |
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