View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11444_high_4 (Length: 381)
Name: NF11444_high_4
Description: NF11444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11444_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 49018853 - 49018995
Alignment:
| Q |
30 |
atgcatgagtgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggt |
129 |
Q |
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| T |
49018853 |
atgcatgagtgattttggaactgtttgtgtgttgtgttggtgatcagaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggt |
49018952 |
T |
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| Q |
130 |
aagggattaggaaaggtacttgcttattcattttcttcttcca |
172 |
Q |
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| T |
49018953 |
aagggattaggaaaggtacttgcttattcattttcttcttcca |
49018995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 49019059 - 49019202
Alignment:
| Q |
236 |
tccaggagaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
335 |
Q |
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| T |
49019059 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
49019158 |
T |
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| Q |
336 |
tctgaagtttaaattttatatctgggttggaattatttattgaatt |
381 |
Q |
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| T |
49019159 |
tctgaagttt--gttttacatctgggttggaattatttattgaatt |
49019202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 8344964 - 8345097
Alignment:
| Q |
39 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggtaagggatta |
138 |
Q |
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| T |
8344964 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggtttgactgttaagggaggtaagggatta |
8345063 |
T |
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| Q |
139 |
ggaaaggtacttgcttattcattttcttcttcca |
172 |
Q |
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| T |
8345064 |
ggaaaggtacttgcttattcattttcttcttcca |
8345097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 42824677 - 42824544
Alignment:
| Q |
39 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggtaagggatta |
138 |
Q |
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| T |
42824677 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggtttgactgttaagggaggtaagggatta |
42824578 |
T |
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| Q |
139 |
ggaaaggtacttgcttattcattttcttcttcca |
172 |
Q |
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| T |
42824577 |
ggaaaggtacttgcttattcattttcttcttcca |
42824544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 8345161 - 8345306
Alignment:
| Q |
236 |
tccaggagaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
335 |
Q |
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||||||| |||||||||||||||||| || ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
8345161 |
tccaggaaaattgatgtagggatttcgtccaattcaacttctgatgaattgattggtgaaaatatagaatgtcaggtatgtggcctttttaattaatttt |
8345260 |
T |
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| Q |
336 |
tctgaagtttaaattttatatctgggttggaattatttattgaatt |
381 |
Q |
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| T |
8345261 |
tctgaagtttaaattttatatctggtttggaattatttattgaatt |
8345306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 236 - 381
Target Start/End: Complemental strand, 42824453 - 42824308
Alignment:
| Q |
236 |
tccaggagaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
335 |
Q |
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||||||| |||||||||||||||||| || ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
42824453 |
tccaggaaaattgatgtagggatttcgtccaattcaacttctgatgaattgattggtgaaaatatagaatgtcaggtatgtggcctttttaattaatttt |
42824354 |
T |
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| Q |
336 |
tctgaagtttaaattttatatctgggttggaattatttattgaatt |
381 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42824353 |
tctgaagtttaaattttatatctggtttggaattatttattgaatt |
42824308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 50861269 - 50861337
Alignment:
| Q |
244 |
aattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
312 |
Q |
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| T |
50861269 |
aattgatgttgggatttcgtcgaattcaactactggtgaattgattggtggaaatagagaatgccaggt |
50861337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 39073819 - 39073745
Alignment:
| Q |
238 |
caggagaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
312 |
Q |
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||||| ||||||||| |||||| || ||||| |||| ||||||||||||| || |||||||||||||||||| |
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| T |
39073819 |
caggaaaattgatgtttggattttgtcaaattcgacttttggtgaattgattgatggaaatagagaatgtcaggt |
39073745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 36588170 - 36588096
Alignment:
| Q |
238 |
caggagaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
312 |
Q |
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||||| ||||||| | |||||||| || ||||| |||||||||||||||||| | | | ||||||| |||||||| |
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| T |
36588170 |
caggaaaattgatcttgggatttcgtcaaattcgacttctggtgaattgattggcggatatagagattgtcaggt |
36588096 |
T |
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