View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11444_high_5 (Length: 372)

Name: NF11444_high_5
Description: NF11444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11444_high_5
NF11444_high_5
[»] chr3 (1 HSPs)
chr3 (140-234)||(25191760-25191854)
[»] chr7 (2 HSPs)
chr7 (1-85)||(2479991-2480075)
chr7 (86-125)||(2480138-2480177)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 25191760 - 25191854
Alignment:
Q  140 aaaaaacagtacatagatagattctcgtacttaccctttgagcaaagacaacaacaacaaaaaagagttaccctttgagcacaacaaaattacaa 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25191760 aaaaaacagtacatagatagattctcgtacttaccctttgagcaaagacaacaacaacaaaaaagagttaccctttgagcacaccaaaattacaa 25191854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2479991 - 2480075
Alignment:
Q  1 aacacataatgaggttgacgttctcacattggtatttctaaagaaaggtatgaacactttgtatcctttcttcaacaataaattg 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2479991 aacacataatgaggttgacgttctcacattggtatttctaaagaaaggtatgaacactttgtatcctttcttcaacaataaattg 2480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 2480138 - 2480177
Alignment:
Q  86 tgttatctcatgctacttacatgttaattttactttttgg 125  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  2480138 tgttatctcatgctatttacatgttaattttactttttgg 2480177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University