View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11444_high_6 (Length: 369)
Name: NF11444_high_6
Description: NF11444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11444_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 54852511 - 54852198
Alignment:
| Q |
15 |
atatgaaatttggcctgaccaagatacgaaggaatggcacttccaaaaaataccacaaaataatctaagatatgagccaatactcgacaaaaactcccaa |
114 |
Q |
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| T |
54852511 |
atatgaaatttggcctgactaagatacgaaggaatggcacttccaaaaaataccacaaaataatctaagatatgagccaatactcgacaaaaactcccaa |
54852412 |
T |
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| Q |
115 |
tgctccccagctgcaactcaaaatttcgaacctcaaagatcaaataccatcaccactaaatacaaagtatgctatacatatccacagcggaactatccga |
214 |
Q |
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| T |
54852411 |
tgctccccagctgcaactcaaaatttcgaacctcaaagatcaaataccatcaccactaaatacaaagtatgctacacatatccacggcggaactatccga |
54852312 |
T |
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| Q |
215 |
ctattgcccaaccgagacagcaaaagcagaaatagtgctatcccaaccaagaaacagcgcacaaaacctgtagactatatacacagtccacaagaagccg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54852311 |
ctattgcccaaccgagacagcaaaagcagaaatagtgctatccca---aagaaacagcgcacaaaacctgtagactatatacacagtccacaagaagccg |
54852215 |
T |
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| Q |
315 |
cacaaccacactgtaaa |
331 |
Q |
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||||||||||||||||| |
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| T |
54852214 |
cacaaccacactgtaaa |
54852198 |
T |
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