View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11444_high_7 (Length: 347)
Name: NF11444_high_7
Description: NF11444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11444_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 23495688 - 23496020
Alignment:
| Q |
15 |
tattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggattatgttaacatggattctagccgtgagaacgatacgagagt |
114 |
Q |
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| T |
23495688 |
tattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggagcatgttaacatggattctagccgtgagaacgatacgagagt |
23495787 |
T |
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| Q |
115 |
tttgttctttgcannnnnnnctcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgc |
214 |
Q |
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| T |
23495788 |
tttgttctttgcatttttttttcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgc |
23495887 |
T |
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| Q |
215 |
tcaagcagacatgtgataataaacaagtcctatatcaaataatgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaa |
314 |
Q |
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| T |
23495888 |
ttaagcagacatgtaataataaacaagtcctatatcaaatactgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaa |
23495987 |
T |
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| Q |
315 |
tatcattcaatattgcaaagaacatgttggtaa |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23495988 |
tatcattcaatattgcaaagaacatgttggtaa |
23496020 |
T |
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