View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11444_high_8 (Length: 333)
Name: NF11444_high_8
Description: NF11444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11444_high_8 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 93 - 333
Target Start/End: Original strand, 21551876 - 21552116
Alignment:
| Q |
93 |
aacacttatcaatgatattaaagnnnnnnnttatgtttatatcttcacannnnnnncactattttcttcatagtaatataatttatatctctacacctta |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21551876 |
aacacttatcaatgatattaaagaaaaaaattatgtttatatctttacatttttttcacaattttcttcatagtaatataatttatatctctacatctta |
21551975 |
T |
|
| Q |
193 |
cctgaattttgattcaaggtaatttgaacttcttggcttttgtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatggaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21551976 |
cctgaattttgattcaaggtaatttgaacttcttggctttggtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatggaa |
21552075 |
T |
|
| Q |
293 |
cattgtctaagttaacaccttttatgttcaatggagcaata |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21552076 |
cattgtctaagttaacaccttttatgttcaatggagcaata |
21552116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 21551830 - 21551881
Alignment:
| Q |
12 |
cagaacctgtgggacaaaaacagttgttaaaatcaaatcaccgtaaaacact |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21551830 |
cagaacctgtgggacaaaaacagttgttaaaatcaaatcaccgtaaaacact |
21551881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 299
Target Start/End: Complemental strand, 21655725 - 21655616
Alignment:
| Q |
190 |
ttacctgaattttgattcaaggtaatttgaacttcttggcttttgtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatg |
289 |
Q |
| |
|
|||||||| | ||||||||| |||| ||||||||| | |||| || ||||||| | |||||||||| ||||||||||||||||||||||| | ||||| |
|
|
| T |
21655725 |
ttacctgattcttgattcaatgtaagttgaacttcccgactttggttgagaatttgcatattttcttgcccccataaaggagcatagttttgcatgaatg |
21655626 |
T |
|
| Q |
290 |
gaacattgtc |
299 |
Q |
| |
|
|||||||||| |
|
|
| T |
21655625 |
gaacattgtc |
21655616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University