View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11445_high_5 (Length: 249)
Name: NF11445_high_5
Description: NF11445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11445_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 5450682 - 5450896
Alignment:
| Q |
19 |
ccacggatatgaaatgccatccaatatccgatcaaaacacaaacacataaacataaaaacagaacaccaaaccaagtatctagaaaatatcgatcacttt |
118 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
5450682 |
ccacgaatatgaaatcccatccaatatccgatcaaaacataaacacataaacataaaaacagaacaccaaaccaagtatccagaaaatatcaatcacttt |
5450781 |
T |
|
| Q |
119 |
gaaaataaataatgacgacgnnnnnnntgttcaaaggttgtgttttcccgttttaataaatactttggtgatcgggtgtgtggtttgttggaaggtaatg |
218 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5450782 |
gaaaataaataatgacgatgaaaaaaatgttcaaagtttgtgttttcccgttttaataaatactttggtgatcgggtgtgtggtttgttggaaagtaatg |
5450881 |
T |
|
| Q |
219 |
tggaatcttggcctt |
233 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5450882 |
tggaatcttggcctt |
5450896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 20749895 - 20749846
Alignment:
| Q |
184 |
tggtgatcgggtgtgtggtttgttggaaggtaatgtggaatcttggcctt |
233 |
Q |
| |
|
|||||||| ||||||| | |||||||||| ||||| |||||||||||||| |
|
|
| T |
20749895 |
tggtgatcaggtgtgtcgattgttggaagataatggggaatcttggcctt |
20749846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 30943501 - 30943420
Alignment:
| Q |
104 |
aatatcgatcactttgaaaataaataatgacgacgnnnnnnntgttcaaaggttgtgttttcccgttttaataaatactttg |
185 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| | |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
30943501 |
aatatcgatgactttgaaaataaataatgatgacaagaaaaatattcaaatgttgtgttttctcgttttaataaatactttg |
30943420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 45331064 - 45330985
Alignment:
| Q |
104 |
aatatcgatcactttgaaaataaataatgacgacgnnnnnnntgttcaaaggttgtgttttcccgttttaataaatacttt |
184 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
45331064 |
aatatcgatgactttgaaaatatataatgatgac-agaaaaatgttcaaaggttgtgcttccccgttttaataaatacttt |
45330985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University