View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11445_low_1 (Length: 466)
Name: NF11445_low_1
Description: NF11445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11445_low_1 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 43144104 - 43144535
Alignment:
| Q |
19 |
atctaatcagttcaggaacacaaaattttggggtactgatcatatggacattcaaagtagaaaggggtgctgaaaaacttatttacttttcaaatctatg |
118 |
Q |
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| T |
43144104 |
atctaatcagttcaggaacacaaaattttggggtactgatcatatggacattcaaagtagaaaggggtgctgaaaaacttatttacttttcaaatctatg |
43144203 |
T |
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| Q |
119 |
cctgctggttatagcctggtaatcagctttattcttacacttgctggatgcatggcggtctgatgcgcttatgtataaaatttcccctctgataacctta |
218 |
Q |
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| T |
43144204 |
cctgctggttatagcctggtaatcagctttattcttacacttgctggatgcatggcggtctgatgcgcttatgtataaaattccccctctgataacctta |
43144303 |
T |
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| Q |
219 |
ctannnnnnnatttatttggaatttctcaataagatgccctttttgtgacaggttctttcagttcctcgtgcgtgattttttctctttttagcaacctct |
318 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43144304 |
ctatttatttatttatttggaatttctcaataagatgccctttttgtgacaggttctttcagttcctcgtgtgtgattttttctctttttagcaacctct |
43144403 |
T |
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| Q |
319 |
tagactgttgcctagatctcacatttgccaacttattgtttaagacaaatagcatgcttgttcataattgaccaagaatatcataaatattttccatgca |
418 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144404 |
tagactgttgcctagatctcacatctgccaacttattgtttaagacaaatagcatgcttgttcataattgaccaagaatatcataaatattttccatgca |
43144503 |
T |
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| Q |
419 |
tttcttgattcaagttcttattacacatgttc |
450 |
Q |
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| T |
43144504 |
tttcttgattcaagttcttattacacatgttc |
43144535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 296 - 444
Target Start/End: Original strand, 42432372 - 42432523
Alignment:
| Q |
296 |
tttttctctttttagcaacctcttagactgttgcctagatctcacatttgccaacttattgtttaagacaaa---tagcatgcttgttcataattgacca |
392 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||| |||||| ||||||||| |
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| T |
42432372 |
tttttatctttttagcaacctcttagaccattgcctagatctcacatcagccaacttattgtttaagacaaaaaatatcatgtttgttcctaattgaccg |
42432471 |
T |
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| Q |
393 |
agaatatcataaatattttccatgcatttcttgattcaagttcttattacac |
444 |
Q |
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| T |
42432472 |
agaatatcataaatattttccatgcatttcttgattcaagttgttactacac |
42432523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 119632 - 119701
Alignment:
| Q |
375 |
cttgttcataattgaccaagaatatcataaatattttccatgcatttcttgattcaagttcttattacac |
444 |
Q |
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| T |
119632 |
cttgttcctaattgaccgagaatatcataaatattttccatgcatttcttgattcaagttgttattacac |
119701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 119512 - 119594
Alignment:
| Q |
38 |
acaaaattttggggtactgatcatatggacattcaaagtagaaaggggtgctgaaaaact--tatttacttttcaaatctatg |
118 |
Q |
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| T |
119512 |
acaaaattttgggatactgattatatgggcattctgagtagaaaggggaactgaaaaacttatatgtacttttcaaatctatg |
119594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 17336245 - 17336187
Alignment:
| Q |
42 |
aattttggggtactgatcatatggacattcaaagtagaaaggggtgctgaaaaacttat |
100 |
Q |
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| T |
17336245 |
aattttgggatattgatcatatgggcattctaagcagaaaggggagttgaaaaacttat |
17336187 |
T |
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