View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11445_low_3 (Length: 391)

Name: NF11445_low_3
Description: NF11445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11445_low_3
NF11445_low_3
[»] chr5 (14 HSPs)
chr5 (100-380)||(41337137-41337417)
chr5 (151-364)||(31188434-31188647)
chr5 (161-364)||(31178399-31178602)
chr5 (152-364)||(31225166-31225378)
chr5 (105-273)||(41316335-41316503)
chr5 (105-350)||(41332238-41332483)
chr5 (181-367)||(41369731-41369918)
chr5 (105-213)||(41286404-41286512)
chr5 (105-368)||(41366400-41366660)
chr5 (105-273)||(41328302-41328470)
chr5 (105-355)||(41324322-41324572)
chr5 (109-273)||(41310595-41310759)
chr5 (222-267)||(41431274-41431319)
chr5 (324-364)||(41286280-41286320)
[»] chr4 (1 HSPs)
chr4 (105-365)||(17249076-17249336)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 100 - 380
Target Start/End: Complemental strand, 41337417 - 41337137
Alignment:
Q  100 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337417 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 41337318  T
Q  200 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337317 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 41337218  T
Q  300 cactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggccctatgcttc 380  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41337217 cactctacttaccttttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttc 41337137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 364
Target Start/End: Original strand, 31188434 - 31188647
Alignment:
Q  151 tgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgt 250  Q
    ||||||||| ||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||  |||||| |    
T  31188434 tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat 31188533  T
Q  251 cttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaat 350  Q
    ||||||||||| |||||||||||   || |   | |||||| | |||||| | ||||| |||  |||||  ||||||| ||||||||||| |||||||||    
T  31188534 cttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaat 31188633  T
Q  351 acaaaattctccca 364  Q
    ||||||||||||||    
T  31188634 acaaaattctccca 31188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 161 - 364
Target Start/End: Original strand, 31178399 - 31178602
Alignment:
Q  161 cattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat 260  Q
    ||||||| ||||||| ||||| |||  |||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| || ||| |||||||||||    
T  31178399 cattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatat 31178498  T
Q  261 cctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattct 360  Q
    | |||||||||||   || ||  | |||| | |||||||||| | ||| |||  |||||| ||||||||||||||||||| |||||||||||||||| ||    
T  31178499 catatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcct 31178598  T
Q  361 ccca 364  Q
    ||||    
T  31178599 ccca 31178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 364
Target Start/End: Complemental strand, 31225378 - 31225166
Alignment:
Q  152 gtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtc 251  Q
    |||||||  ||||||| ||||| | ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| |||||| ||    
T  31225378 gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc 31225279  T
Q  252 ttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaata 351  Q
    |||||||||| |||||||||||   || |   | |||||| |||||||| | ||||| |||  |||||| ||||| ||||||||||||| |||| |||||    
T  31225278 ttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaata 31225179  T
Q  352 caaaattctccca 364  Q
    |||||| ||||||    
T  31225178 caaaatcctccca 31225166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 105 - 273
Target Start/End: Complemental strand, 41316503 - 41316335
Alignment:
Q  105 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 204  Q
    ||||||||| |||| |||||||||||| |||||||| || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41316503 actaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41316404  T
Q  205 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 273  Q
    || ||||||  ||   ||||| || || | ||||| | |||||||||||||||| || |||||| ||||    
T  41316403 tcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctct 41316335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 350
Target Start/End: Complemental strand, 41332483 - 41332238
Alignment:
Q  105 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 204  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| ||||| |  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41332483 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatcttca 41332384  T
Q  205 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 304  Q
    || ||||||| ||   ||||| || |||| ||||| | |||||||||||||| |||| |||||| |||||  || | | | || | | |||||||| | |    
T  41332383 tcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctctatgaattttttccattttggtcttctccc 41332284  T
Q  305 tacttaccttttgaagtattttaatagaaggatacaaatcagcaat 350  Q
    |||| |    |||||| ||||||||||||||||||||||| |||||    
T  41332283 tactcatgcattgaagcattttaatagaaggatacaaatctgcaat 41332238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 367
Target Start/End: Complemental strand, 41369918 - 41369731
Alignment:
Q  181 agaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctcct-tgt 279  Q
    ||||||||||||||||||||||| |||||| ||  ||  || ||||||||| | |||||||||||||| |||||||||||  |||||  |  | || ||     
T  41369918 agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctga 41369819  T
Q  280 aatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata 367  Q
    | | | || | | |||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  41369818 agtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata 41369731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 41286512 - 41286404
Alignment:
Q  105 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 204  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||| |||| ||||||  || |||| ||||||| ||||||||||||||||| ||| ||||||    
T  41286512 actaacctggatgactgcttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttca 41286413  T
Q  205 tccttgctt 213  Q
    || ||||||    
T  41286412 tctttgctt 41286404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 41366660 - 41366400
Alignment:
Q  105 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 204  Q
    ||||||||| ||||| ||||||||||| || || |||||||| |||||||||||   |||| || |||||| ||||||||||||||| ||||| || |||    
T  41366660 actaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatctactagatcatca 41366564  T
Q  205 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 304  Q
    | ||| || | |||  ||||| |  || | ||||||| |||||| |||||||||||| ||||| ||||||  || | | | |||| | |  || |    |    
T  41366563 ttcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggcc 41366464  T
Q  305 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaatag 368  Q
     ||||| | ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||    
T  41366463 aacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatag 41366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 273
Target Start/End: Complemental strand, 41328470 - 41328302
Alignment:
Q  105 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 204  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41328470 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41328371  T
Q  205 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 273  Q
    || ||||||| ||   ||||| |  |||| ||||| | ||||||||||||   |||| |||||||||||    
T  41328370 tcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctct 41328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 355
Target Start/End: Complemental strand, 41324572 - 41324322
Alignment:
Q  105 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 204  Q
    ||||||||| |||| ||| |||||||| ||||| || || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| | |||     
T  41324572 actaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattct 41324473  T
Q  205 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 304  Q
    || |||||   ||   ||||| || || | ||||| | ||| ||||||||||||||| |||||||||||   || | | | || | | ||| |||| | |    
T  41324472 tcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagtttttccattttggccttcgccc 41324373  T
Q  305 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaa 355  Q
    |||| ||   |||||| | |||||||||||||||||||||| |||||||||    
T  41324372 tactcacgcattgaagcaatttaatagaaggatacaaatcaacaatacaaa 41324322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 41310759 - 41310595
Alignment:
Q  109 acctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatcct 208  Q
    ||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| |||| || ||||||||||||||| ||||| |||||||| |    
T  41310759 acctggatgattgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcat 41310660  T
Q  209 tgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 273  Q
    ||||   ||   || || || || | ||||| | ||||||||||||||||||| ||| |||||||    
T  41310659 tgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctct 41310595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
Q  222 gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 267  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41431319 gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca 41431274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 41286320 - 41286280
Alignment:
Q  324 tttaatagaaggatacaaatcagcaatacaaaattctccca 364  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  41286320 tttaatagaaggatacaaatcaacaatgcaaaatcctccca 41286280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 105 - 365
Target Start/End: Original strand, 17249076 - 17249336
Alignment:
Q  105 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 204  Q
    ||||||||| |||| |||||||||||| ||||||||||| |  | ||||| || | || |||| ||||||| ||||| |||| |||||||||| ||||||    
T  17249076 actaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaactagatcttca 17249175  T
Q  205 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 304  Q
    ||||||| || |||  | ||    ||||| |||||||  ||||| |||||||||||| ||||||| || |  || | | | || | | |||| |||||      
T  17249176 tccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaatttccctatgaagtttttccattttggttttcacct 17249275  T
Q  305 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaa 365  Q
     ||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  17249276 gacttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctcccaa 17249336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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