View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_13 (Length: 476)
Name: NF11446_high_13
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 64 - 476
Target Start/End: Original strand, 33297594 - 33298006
Alignment:
| Q |
64 |
acttaaatggagattatttagttaattattgtcattgtaaacatagtaactatctactgattaatggcatgatggttgataggtactagttgcacgccac |
163 |
Q |
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| T |
33297594 |
acttaaatagagattatttagttaattattgtcattgtaaacatagtaactatctactgattaatggcatgatggttgataggtactagttgcacgccac |
33297693 |
T |
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| Q |
164 |
ctcctgttacattagcataagatattgcacataaaactgattaataatacttacaacataattgagacgtattggattgattttatctccctctccatgc |
263 |
Q |
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| T |
33297694 |
ctcctgttacattagtataagatattgcacataaaactgattaataatacttacaacataattgagacgtattggattgattttatctccctctccatgc |
33297793 |
T |
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| Q |
264 |
catgtttcgtccttcttccctttaccaatactctcatagtcatgttgcaagttcattcaagagctttttcttcttcattccaactaccttagctctatta |
363 |
Q |
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| T |
33297794 |
catgtttcgtccttcttccctttaccaatactctcatactcatgttgcaagttcattcaagagctttttcttcttcattccaactaccttagctctatta |
33297893 |
T |
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| Q |
364 |
acctcactttccattctcttctatgtttactatacctcaatcatcttcacacaccatcatcaacataacaaccaacaatccactcttattaacttcaaat |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33297894 |
acctcactttccattctcttctatgtttactatacctcaatcatcttcacacaccatcatcaacataacaaccaacaatccactcttattaacttcaaat |
33297993 |
T |
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| Q |
464 |
catcatctccaaa |
476 |
Q |
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| T |
33297994 |
catcatctccaaa |
33298006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 33297517 - 33297569
Alignment:
| Q |
19 |
cacgtcacaccaatttgatctaacaaccatacaaaatatatttttacttaaat |
71 |
Q |
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| T |
33297517 |
cacgtcacaccaatttgatctaacaaccatacaaaatatatttttacttaaat |
33297569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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