View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_15 (Length: 451)
Name: NF11446_high_15
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 34299986 - 34300306
Alignment:
| Q |
18 |
atatttctatctagctccaaatccaagtttaacaaattattcattctgttgcaatttacaatggcatcatcatattgtgtaggaactctattttcctcac |
117 |
Q |
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| T |
34299986 |
atatttctatctagctccaaatccaagtttaacaaattattcattctgttgaaatttacaatggcatcatcat---gtgtaggaactctattttcctcac |
34300082 |
T |
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| Q |
118 |
aaaccaaacatttgactgctaccaaggtaagtgtaactttgcattcaacaaagagaagagttgtaagagcagctgtcacagaaaaacttggaatcaagat |
217 |
Q |
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| T |
34300083 |
aaaccaaacatttgactgctaccaaggtaagtgtaactttgcattcaacaaagagaagagttgtaagagcagctgtcacagaaaaacttggaatcaagat |
34300182 |
T |
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| Q |
218 |
tgagagcaaccctcctgagtccaagctcactcaacttggtgttaggcaatggcccaagtaaaaaccacatttcttcattatcttgttactttttacctta |
317 |
Q |
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| T |
34300183 |
tgagagcaaccctcctgagtccaagctcactcaacttggtgttagacaatggcccaagtaaaaaccacatttcttcattatcttgttactttttacctta |
34300282 |
T |
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| Q |
318 |
tcaggtttattattctaatgaaac |
341 |
Q |
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| T |
34300283 |
tcaggtttattattctaatgaaac |
34300306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 444
Target Start/End: Original strand, 34300382 - 34300412
Alignment:
| Q |
414 |
aatttatgattcatgctatgtgcctatgcta |
444 |
Q |
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| T |
34300382 |
aatttatgattcatgctatgtgcctatgcta |
34300412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 20661399 - 20661365
Alignment:
| Q |
243 |
ctcactcaacttggtgttaggcaatggcccaagta |
277 |
Q |
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| T |
20661399 |
ctcactcaacttggtgttaggcaatggtccaagta |
20661365 |
T |
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