View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_16 (Length: 448)
Name: NF11446_high_16
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 9451939 - 9451499
Alignment:
| Q |
14 |
aggccttcagtttgaggaggttgagaaattgcttcaaaaagggtttagacctttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtg |
113 |
Q |
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| T |
9451939 |
aggccttcagtttgaggaggttgagaaattgcttcaaaaagggtttagacctttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtg |
9451840 |
T |
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| Q |
114 |
caagagatggcttgactgttatgtcattttgttcaacacaaaacttgttgtgtttggattaaccgtagaaatatgttataataaatatcaactatgtata |
213 |
Q |
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| T |
9451839 |
caagagatggcttgactgttatgtcattttgttcaacacaaaacttgttgtgtttggattaaccgtagaaatatgttataataaatatcaactatgtata |
9451740 |
T |
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| Q |
214 |
aatcatttcaattttcgcagaagttgcatattgtatacataaaagcatatttgtatacaatgttgtataaatgatttcaattgtcacaaaacttgttttg |
313 |
Q |
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| T |
9451739 |
aatcatttcaattttcgcagaagttgcatattgtatacataaaagcatatttgtatacaatgttgtataaatgatttcaattgtcacaaaacttgttttg |
9451640 |
T |
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| Q |
314 |
tttggattaactgtaatagaaatctggaggatataaaccaaactaaataaaaatacactgttagtttt---------------------tcgtgccctat |
392 |
Q |
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| T |
9451639 |
tttggattaactgtaatagaaatctggaggatataaaccaaactaaataaaaatacactgttagtttttagagtttggactattctacctcgtgccctat |
9451540 |
T |
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| Q |
393 |
gattattcctattttatcaatagaaaagtgatgtgtttgat |
433 |
Q |
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| T |
9451539 |
gattattcctattttatcaatagaaaagtgatgtgtttgat |
9451499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 9440709 - 9440567
Alignment:
| Q |
18 |
cttcagtttgaggaggttgagaaattgcttcaaaaagggtttagacctttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtgcaag |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |
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| T |
9440709 |
cttcagtttgaggaggttgagaaattgcttcagaaagggtttagacctttcccatttaacaagaaaaaggatgatgacaaagggaaggaggaagtgaaac |
9440610 |
T |
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| Q |
118 |
agatggcttgactgttatgtcattttgttcaacacaaaacttgt |
161 |
Q |
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| T |
9440609 |
acatagcttgattgttatgtc-ttttgttcaagacacaacttgt |
9440567 |
T |
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