View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11446_high_2 (Length: 643)
Name: NF11446_high_2
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Original strand, 33223171 - 33223781
Alignment:
| Q |
18 |
attttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaacttcctttccatccattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223171 |
attttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaacttcctttccatccattc |
33223270 |
T |
|
| Q |
118 |
cattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattattattgccattaatcacaccttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223271 |
cattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattattattgccattaatcacaccttga |
33223370 |
T |
|
| Q |
218 |
ttgttaacaatagatcctccaatttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcggtctcggattcaatctcaatcaatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33223371 |
ttgttaacaatagatcctccaatttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcggtatcggattcaatctcaatcaatt |
33223470 |
T |
|
| Q |
318 |
gtctgttctcataatagtgctgccttctttgagttacagcaccactatcagggcatgccttccaattccaaatccttgttgtagatacttgttgaaacat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223471 |
gtctgttctcataatagtgctgccttctttgagttacagcaccactatcagggcatgccttccaattccaaatccttgttgtagatacttgttgaaacat |
33223570 |
T |
|
| Q |
418 |
ttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaacacagtaataactacttccgttgaaagccag |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
33223571 |
ttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaatacagtaataactacttccgttgaaagcccg |
33223670 |
T |
|
| Q |
518 |
acatcaacnnnnnnnngaaaaaatcccggcatcattat-nnnnnnncaatctctacaagtagcataatagtgtgctactgtcactgcaccagacttttca |
616 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223671 |
acatcaacttttttttgaaaaaatcccggcatcattataaaaaaaacaatctgtacaagtagcataatagtgtgctactgtcactgcaccagacttttca |
33223770 |
T |
|
| Q |
617 |
actcctctctt |
627 |
Q |
| |
|
||||||||||| |
|
|
| T |
33223771 |
actcctctctt |
33223781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 282 - 469
Target Start/End: Original strand, 33226350 - 33226543
Alignment:
| Q |
282 |
tctcagtctcggtctcggattcaatctcaatcaattgtctgttctcataatagtgctgccttctttgagttacagc-accactatcagggcatgccttcc |
380 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || ||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
33226350 |
tctcagtctcggtctcaggttcaatctcaaccagttgtctgttctcagaatagtgctgccttctttcagttacaaccaccactatcagggcatgccttcc |
33226449 |
T |
|
| Q |
381 |
aattccaaatccttgttgtagatacttgttgaaacatttgaagcaa-----tgtcatagaagggtgttcaaaaggacccttcattgaaacatcc |
469 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33226450 |
acttccaaatccttgttgtagatacttgttgaaacatttgaagcaatttcttttcttagaagggtgttcagaaggacccttcattgaaacatcc |
33226543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 33226141 - 33226323
Alignment:
| Q |
18 |
attttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaac-ttcctttccatcc--- |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| || ||||||||| |
|
|
| T |
33226141 |
attttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatcaatcccctccttcctgt-ttcttaacttttttttccatccatt |
33226239 |
T |
|
| Q |
114 |
-attccattaaaaaacct-cccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattatt |
195 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| | |||||| |
|
|
| T |
33226240 |
aattccattaaaatacctccccctctccttcgttgacccaaaccgaaagatatttaaatacttggcaaacacattgcaattatt |
33226323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 371 - 477
Target Start/End: Complemental strand, 33246026 - 33245920
Alignment:
| Q |
371 |
catgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatcca |
470 |
Q |
| |
|
|||||| |||| |||||||||| |||| |||||||||||| |||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33246026 |
catgccgtccacttccaaatccatgttctagatacttgttcaaacatttgaaggaataccaaagaagggtgttcataaggatccttcattgaaacatcca |
33245927 |
T |
|
| Q |
471 |
aaccatt |
477 |
Q |
| |
|
|| |||| |
|
|
| T |
33245926 |
aatcatt |
33245920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 576 - 632
Target Start/End: Original strand, 33226664 - 33226720
Alignment:
| Q |
576 |
tagcataatagtgtgctactgtcactgcaccagacttttcaactcctctctttctct |
632 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226664 |
tagcataatagtgtgctactctcactgcaccagacttttcaactcctctctttctct |
33226720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 33226558 - 33226593
Alignment:
| Q |
470 |
aaaccattattgtttaacacagtaataactacttcc |
505 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33226558 |
aaaccattattgtttaccacagtaataactacttcc |
33226593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University