View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_20 (Length: 419)
Name: NF11446_high_20
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 215 - 401
Target Start/End: Complemental strand, 9786808 - 9786622
Alignment:
| Q |
215 |
ttaaatctccttacttgttggggtatggtatgttgggtgaaaattgatgtaaattgttctcaatgatttatatgcaccttgtatctttatggttatgggt |
314 |
Q |
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| T |
9786808 |
ttaaatctccttacttgttggggtatggtatgttgggtgaaaattaatgtaaattgttctcaatgatttatatgcaccttgtatctttatggttatgggt |
9786709 |
T |
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| Q |
315 |
ctccatgacatgaatggagtcctgtttggtgaaatattgagttatcttctacatgaattcaccatttcaaattgtaaactgtaaata |
401 |
Q |
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| T |
9786708 |
ctccatgacatgaatggagtcctatttggtgaaatattgagttatcttctacatgaattcaccatttcaaattgtaaactgtaaata |
9786622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 9786906 - 9787099
Alignment:
| Q |
1 |
taacttgagtttcaataaaaaatctaaaattttagccacaatctaatgctgccgtatcctgccagcaaaataattggctatggatcagaaatttaatcat |
100 |
Q |
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| T |
9786906 |
taacttgagtttcaataaaaaatctaaaattgtagccacaatctaatgctgccgtatcctgccaacaaaataattggctatgaatcagaaatttaatcat |
9787005 |
T |
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| Q |
101 |
tgaaattgttggactgggattgcatgtggtagtgattccatgcagcttcatgctataaaattttatggtcattaatttcatatcagatgactca |
194 |
Q |
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| T |
9787006 |
tgaaattgttggactgggattgcatgtggtagtgattccatgcagcttcatgctataaataattatggtcattaatttcatatcggatgactca |
9787099 |
T |
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