View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11446_high_22 (Length: 411)
Name: NF11446_high_22
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 17995999 - 17996372
Alignment:
| Q |
17 |
actatttgccaccaactgaggtgtccaccttctaaccgaagaaaacattgaataacaccaagctagatggctattgtgaactggatcaatatccttcata |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
17995999 |
actatctgccaccaactgaggtgtccaccttctaaccgaagaaaatat-------caccaagctagatggctattgcgaaccgggtcaatatccttcata |
17996091 |
T |
|
| Q |
117 |
cattcaatatgcaggagcatctttctgtctcccatctctgtgactttaacaccttgaatgccttccataaccaaagcttgttgcacctccaaaacatcat |
216 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
17996092 |
ccttcaatatgcaaaagcatctttctgtctcccatctctatgactttaacacctcgaatgccttccataaccaaagcttgttgcacctccaaagcatcct |
17996191 |
T |
|
| Q |
217 |
tatgatggaacagttcccctataaaggcccactgcaaatagtccagcatatcctccgatggaagaatttccaatgttggagaaaccccattcataaccgg |
316 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||||||||||| ||||| |||| |||||||| ||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
17996192 |
tctgatggaacagttcccccataaaggtccactgcaaatagtctagcatctccttcgatggaacaatttccaatgttggagcaaccccattcaaaatcgg |
17996291 |
T |
|
| Q |
317 |
aaaattatccttctccaacgtcaacgcatttttgaacgatttccccggagtagcggtgacgccaaagccttcctccgcctc |
397 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17996292 |
aaaattatccttttccaacgtcaacgcatttttgaacgatttccccggagtagcggtgacgccaaagccttcctccgcctc |
17996372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University