View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_25 (Length: 407)
Name: NF11446_high_25
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 21445397 - 21445782
Alignment:
| Q |
1 |
ctccacaacatcaagcttggtctttaactcatagtcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatca |
100 |
Q |
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| T |
21445397 |
ctccacaacatcaagcttggtctttaactcgtaatcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatca |
21445496 |
T |
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| Q |
101 |
gacttcgttgattcctcgtctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445497 |
gacttcgttgattcctcgtctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatacttt |
21445596 |
T |
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| Q |
201 |
cagattgaaaatgtgtcaaatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445597 |
cagattgaaaatgtgtcaaatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgtt |
21445696 |
T |
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| Q |
301 |
gtctagagtctgtggtgcttcataggtactactcaaaacttagcttggcatcgattcattcccaattgataacccaacgtcacggg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21445697 |
gtctagagtctgtggtgcttcataggtactactcaaaacttagcttggcatcaattcattcccaattgataacccaacgtcacggg |
21445782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 40686896 - 40686811
Alignment:
| Q |
35 |
tcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcgtc |
120 |
Q |
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|||||||||| |||||| ||| |||| |||||||| |||||| | ||| || ||||||||||||||||| |||||||||||||| |
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| T |
40686896 |
tcatcatctgaccaatatccactttcaggcacatcttgcattgccaaatcatcatactcttcatcagacttggttgattcctcgtc |
40686811 |
T |
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