View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_29 (Length: 374)
Name: NF11446_high_29
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 40481609 - 40481260
Alignment:
| Q |
1 |
tacctgaatgtatatatatttcattctggaaatgaaatagcatagatattgattttgaataatcacataattttcatcatcccattgaaattgaaaaacc |
100 |
Q |
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| T |
40481609 |
tacctgaatgtatatat--ttcattctggaaatgaaatagcatagatattgattttgaataatcacataattttcatcatcccattgaaattgaaaaaac |
40481512 |
T |
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| Q |
101 |
ttgtgaaaaattaagatgaaacatttattcattaggttagctggtaatataagtggatgatacaaatacaaaccccatcatgaaaaatgggaattttttc |
200 |
Q |
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| T |
40481511 |
ttgtgaaaaattaagatgaaacatttattcattaggttagctggtaatataagtggatgatacaaatacaaaccccatcatgaaaaatgggaaatttttc |
40481412 |
T |
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| Q |
201 |
actcaagtaaaacatcactgcaaaagtaacctcgactacataatgaacaacaattaaagaaaaaagaaaactataagaaaatagtacacaacacaatcat |
300 |
Q |
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| T |
40481411 |
actcaagtaaaacatcactgcaaaagtaagctcgactacataatgaacaacaattaaagaaaaaagaaaactataagaaaatagtacacaacacaatcat |
40481312 |
T |
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| Q |
301 |
ggatagcatgcatgcatctccatgaatattcagcatgtagagctagttgggg |
352 |
Q |
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| T |
40481311 |
gcatagcatgcatgcatctccatgaatattcagcatgtagagttagttgggg |
40481260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 253
Target Start/End: Complemental strand, 40492120 - 40491915
Alignment:
| Q |
42 |
atagatattgattttgaataatcacataattttcatcatcccattgaaattgaaaaaccttgtgaaaaattaagatgaaacatttattcattaggttagc |
141 |
Q |
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| T |
40492120 |
atagatattgattttgaataattaaataattttcatc---ccattgaaattcaaaaaccttgtgaaaaat-aagatgaaatagttcttcattaggtatgc |
40492025 |
T |
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| Q |
142 |
tggtaatataagtggatgatacaaatacaaaccccatcatgaaaaatgg-gaattttttcactcaagtaaaacatcactgcaaaagtaacctcgactaca |
240 |
Q |
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| T |
40492024 |
tggtagtataagcggacgatacaaacacaaaccc---catggaaaatggaaaaaaatttcacactagcaaaacaacattgcaaaagcaacctcgactaca |
40491928 |
T |
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| Q |
241 |
taatgaacaacaa |
253 |
Q |
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| T |
40491927 |
tgatgaacaacaa |
40491915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 40491835 - 40491781
Alignment:
| Q |
306 |
gcatgcatgcatctccatgaatattcagcatgtagagctagttggggcatgtttt |
360 |
Q |
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| T |
40491835 |
gcatgcatgcatttccatgaatattcagcatgtagagctagttggggcatgtttt |
40491781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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