View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_32 (Length: 357)
Name: NF11446_high_32
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 50676542 - 50676900
Alignment:
| Q |
1 |
gggtcagctacatgaatcaaactacgctgcaatgttatatcatatatcttgattatgtggtagagattcgacaatacaacattcatagagtnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50676542 |
gggtcagctacatgaatcaaactacgctacagtgttatatcatatatcttgattatgtcgtagagattcgacaatacaacattcatagagtaaaaaaaaa |
50676641 |
T |
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| Q |
101 |
nnnncaa--gttgaggggaagagtaattacttaccataagcacaatgaacaaaaatgggacgattaagatctcttttacgaagcgcccatttaacagcca |
198 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676642 |
aaaaaaaaagttgaggggaagagtaattacttaccataagcacaatgaacaaaaatgggacgattaagatctcttttacgaagcgcccatttaacagcca |
50676741 |
T |
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| Q |
199 |
attcaatatcaccaggttgaggagacctagtatcccaagtaggaacacatctataaggcaaaccacaactcaaatttttcaacctcggaaaatcacaagt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
50676742 |
attcaatatcaccaggttgaggagacctagtatcccaagtaggaacacatctataaggcaaaccaccactcaaatttttcaacctcggaaactcacaagt |
50676841 |
T |
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| Q |
299 |
acaatcaataatagcaggatcaccaggcggcatcttttccggcgaagaaggccaaccgc |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676842 |
acaatcaataatagcaggatcaccaggcggcatcttttccggcgaagaaggccaaccgc |
50676900 |
T |
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