View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_33 (Length: 351)
Name: NF11446_high_33
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 147 - 333
Target Start/End: Complemental strand, 9786808 - 9786622
Alignment:
| Q |
147 |
ttaaatctccttacttgttggggtatggtatgttgggtgaaaattgatgtaaattgttctcaatgatttatatgcaccttgtatctttatggttatgggt |
246 |
Q |
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| T |
9786808 |
ttaaatctccttacttgttggggtatggtatgttgggtgaaaattaatgtaaattgttctcaatgatttatatgcaccttgtatctttatggttatgggt |
9786709 |
T |
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| Q |
247 |
ctccatgacatgaatggagtcctgtttggtgaaatattgagttatcttctacatgaattcaccatttcaaattgtaaactgtaaata |
333 |
Q |
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| T |
9786708 |
ctccatgacatgaatggagtcctatttggtgaaatattgagttatcttctacatgaattcaccatttcaaattgtaaactgtaaata |
9786622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 9786930 - 9786807
Alignment:
| Q |
1 |
agattttttattgaaactcaagttagatattgatacttgtatgtcaccacgtattaatgattgacatcaatagttttagtagcattactgtagttagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9786930 |
agattttttattgaaactcaagttagatattgatacttgtatgtcaccacgtattaatgattgacatcaatagttttagtagcattactgtagttagaga |
9786831 |
T |
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| Q |
101 |
tttatacaacttaggccccacatt |
124 |
Q |
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| T |
9786830 |
tttatacaacttaggccccgcatt |
9786807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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