View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_34 (Length: 345)
Name: NF11446_high_34
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 40518743 - 40518965
Alignment:
| Q |
18 |
ccaactcctcttctaatggtgcaaggatgatgaagggtttaaaaccgacggtacttccaaaaagaggagctgtggtgaagagggttcttggcatatttac |
117 |
Q |
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| T |
40518743 |
ccaactcctcttctaatggtgcaaggatgatgaagggtttaaaaccgacggtacttccaaaaagaggagctgtggtgaagagggttcttggcatatttac |
40518842 |
T |
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| Q |
118 |
ttcctccaccaccgatgggttagatagttaattacttaccttatgctgaaattataattaggtatcaatcaataatttccatgttttctaatctgtcaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40518843 |
ttcctccaccaccgatgggttagatagttaattacttaccttatgctgaaattataattaggtatcaatcaataacttccatgttttctaatctgtcaa- |
40518941 |
T |
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| Q |
218 |
ataataataataattatgttttgtat |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
40518942 |
--aataataataattatgttttgtat |
40518965 |
T |
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