View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_37 (Length: 336)
Name: NF11446_high_37
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 31492533 - 31492840
Alignment:
| Q |
19 |
ccagcgacctatctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31492533 |
ccagcgacctatctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttg |
31492632 |
T |
|
| Q |
119 |
aaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttgg--- |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31492633 |
aaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttggtga |
31492732 |
T |
|
| Q |
216 |
nnnnnnnnnnnnnnnnnnggatggttttgaaacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
31492733 |
tgatgatgatgatgatgaggatggttttgaaacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacat |
31492832 |
T |
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| Q |
316 |
gttcttct |
323 |
Q |
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|||||||| |
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| T |
31492833 |
gttcttct |
31492840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 31497922 - 31498229
Alignment:
| Q |
19 |
ccagcgacctatctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31497922 |
ccagcgacctatctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttg |
31498021 |
T |
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| Q |
119 |
aaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttgg--- |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31498022 |
aaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttggtga |
31498121 |
T |
|
| Q |
216 |
nnnnnnnnnnnnnnnnnnggatggttttgaaacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
31498122 |
tgatgatgatgatgatgaggatggttttgaaacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacat |
31498221 |
T |
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| Q |
316 |
gttcttct |
323 |
Q |
| |
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|||||||| |
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| T |
31498222 |
gttcttct |
31498229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 31503309 - 31503616
Alignment:
| Q |
19 |
ccagcgacctatctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503309 |
ccagcgacctatctatatactccacaaccttatttgcaggctccaccaatgtatccacatgttaatccaagaccacaaaaacctaagaggagtcgttttg |
31503408 |
T |
|
| Q |
119 |
aaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttgg--- |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503409 |
aaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccagtggggtgactggagttgaacatatgatttatgatgcttttgttggtga |
31503508 |
T |
|
| Q |
216 |
nnnnnnnnnnnnnnnnnnggatggttttgaaacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
31503509 |
tgatgatgatgatgatgaggatggttttgaaacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacat |
31503608 |
T |
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| Q |
316 |
gttcttct |
323 |
Q |
| |
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|||||||| |
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| T |
31503609 |
gttcttct |
31503616 |
T |
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