View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_40 (Length: 317)
Name: NF11446_high_40
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 22717977 - 22717759
Alignment:
| Q |
17 |
tcttcaaatcaacaaagagaataatattggtggtgaggattttgagctacctagattttcattttcaaagaggaaaattgatgagaatagttgcaaaagt |
116 |
Q |
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| T |
22717977 |
tcttcaaatcaacaaagagaataatattggtggtgaggattttgagctacctagattttcattttcaaagaggaaaattgatgagaatagttacaaaagt |
22717878 |
T |
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| Q |
117 |
tcaaatcactatgctaagcaaattgtgaaacaagttaaggaaagtgttgtgagtagaaaagttggtcaagacattaccaacactctcaaaagcaatcagg |
216 |
Q |
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| T |
22717877 |
tcaaatcactatgctaagcaaattgtgaaacaagttaaggaaagtgttgtgagtagaaaagttggtcaagacattaccaacactctcaaaagcaatcagg |
22717778 |
T |
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| Q |
217 |
taagcactttcatgcctta |
235 |
Q |
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| T |
22717777 |
caagcactttcatgcctta |
22717759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 46008457 - 46008582
Alignment:
| Q |
74 |
ttcattttcaaagaggaaaatt---gatgagaatagttgcaaaagttcaaatcactatgctaagcaaattgtgaaacaagttaaggaaagtgttgtgagt |
170 |
Q |
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| T |
46008457 |
ttcattttcaaaaaggaaattttttgatgagaataattgcagaagtccaagtcattatgcaaggcaaattgttaaacaggttaaagagag---tatgagt |
46008553 |
T |
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| Q |
171 |
agaaaagttggtcaagacattaccaacac |
199 |
Q |
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| T |
46008554 |
agaaaagttggtatggacatcaccaacac |
46008582 |
T |
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