View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_high_45 (Length: 308)

Name: NF11446_high_45
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_high_45
NF11446_high_45
[»] chr4 (1 HSPs)
chr4 (1-290)||(54650510-54650799)
[»] chr8 (2 HSPs)
chr8 (1-164)||(34105821-34105984)
chr8 (194-246)||(34105963-34106015)
[»] chr1 (6 HSPs)
chr1 (1-114)||(17978933-17979046)
chr1 (26-75)||(23296171-23296220)
chr1 (194-277)||(23296020-23296103)
chr1 (26-96)||(27791756-27791826)
chr1 (1-73)||(23310347-23310419)
chr1 (194-247)||(27791656-27791709)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 54650510 - 54650799
Alignment:
Q  1 tgttgtgttttctcctgggaatcggccttactcttttggtcacccaggaattgatgttgttgctgccaagtatctccaacaagagcctgaaccaagcgat 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||    
T  54650510 tgttgtgttttctcctgggaatcgaccttactcttttggtcacccaggaattaatgttgttgctgccaagtatctccaacaagagcctgaactaagtgat 54650609  T
Q  101 tccctagggaacccctcctctgatgcacccgatatagagaaactgaatctagaacttgttgaggcctcctctgatgcacccggtatnnnnnnnttgaatc 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||    
T  54650610 tccctagggaacccctcctctgatgcacctgatatagagaaactgaatctaaaacttgttgaggcctcctctgatgcacccggtatagaaaaattgaatc 54650709  T
Q  201 tagaacttactgagctgttggcacaaattcaggaaggtgaaaagcagaacgagacctatgatgagattctgaagcaagacaatgtgatga 290  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  54650710 tagaacttactgaggtgttgacacaaattcaggaaggtgaaaagcagaacgagacccatgatgagattctaaagcaagacaatgtgatga 54650799  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 34105821 - 34105984
Alignment:
Q  1 tgttgtgttttctcctgggaatcggccttactcttttggtcacccaggaattgatgttgttgctgccaagtatctccaacaagagcctgaaccaagcgat 100  Q
    ||||||||| ||||| ||||   |||||||||||||||| || |||||| |||||||||||||||| |||||||||||||||||| |||||||||| |||    
T  34105821 tgttgtgttctctccagggagcaggccttactcttttggacatccaggagttgatgttgttgctgcaaagtatctccaacaagagactgaaccaagtgat 34105920  T
Q  101 tccctagggaacccctcctctgatgcacccgatatagagaaactgaatctagaacttgttgagg 164  Q
    |||| ||  |||||||| |||| ||| || |||||||| ||| ||||||||||||||| |||||    
T  34105921 tcccaagaaaacccctcttctggtgctccagatatagaaaaattgaatctagaacttggtgagg 34105984  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 34105963 - 34106015
Alignment:
Q  194 ttgaatctagaacttactgagctgttggcacaaattcaggaaggtgaaaagca 246  Q
    |||||||||||||||  |||| |||||||||||||||  ||||||||||||||    
T  34105963 ttgaatctagaacttggtgaggtgttggcacaaattcgagaaggtgaaaagca 34106015  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17978933 - 17979046
Alignment:
Q  1 tgttgtgttttctcctgggaatcggccttactcttttggtcacccaggaattgatgttgttgctgccaagtatctccaacaagagcctgaaccaagcgat 100  Q
    ||||||||| ||||| ||  || | |||||||||||||| ||||||||  |||| |||||||| ||||||||||||||||||||| ||||  ||||||||    
T  17978933 tgttgtgttctctcccggtgatagaccttactcttttggccacccaggtgttgacgttgttgcagccaagtatctccaacaagaggctgatgcaagcgat 17979032  T
Q  101 tccctagggaaccc 114  Q
    |||| ||| |||||    
T  17979033 tcccaaggaaaccc 17979046  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 23296220 - 23296171
Alignment:
Q  26 ccttactcttttggtcacccaggaattgatgttgttgctgccaagtatct 75  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  23296220 ccttactcttttggtcacccaggagttgatgttgttgctggcaagtatct 23296171  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 277
Target Start/End: Complemental strand, 23296103 - 23296020
Alignment:
Q  194 ttgaatctagaacttactgagctgttggcacaaattcaggaaggtgaaaagcagaacgagacctatgatgagattctgaagcaa 277  Q
    ||||||| ||||||| ||||||||||||||||||| || |||||||||||| |    |||||  ||||||||||||||||||||    
T  23296103 ttgaatcaagaacttgctgagctgttggcacaaatccaagaaggtgaaaagaaagttgagactcatgatgagattctgaagcaa 23296020  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 27791826 - 27791756
Alignment:
Q  26 ccttactcttttggtcacccaggaattgatgttgttgctgccaagtatctccaacaagagcctgaaccaag 96  Q
    |||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||  ||||||  |||||||    
T  27791826 ccttactcttttggtcaccctggagttgattttgttgctaccaagtatctccaattagagccaaaaccaag 27791756  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23310419 - 23310347
Alignment:
Q  1 tgttgtgttttctcctgggaatcggccttactcttttggtcacccaggaattgatgttgttgctgccaagtat 73  Q
    ||||||||| ||||| |||||    ||||| |||||||||||||||||| ||||| |||||||||||||||||    
T  23310419 tgttgtgttctctccagggaacaatccttattcttttggtcacccaggagttgattttgttgctgccaagtat 23310347  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 27791709 - 27791656
Alignment:
Q  194 ttgaatctagaacttactgagctgttggcacaaattcaggaaggtgaaaagcag 247  Q
    ||||||||||||||| ||||  |||| |||||||||| ||| ||||||||||||    
T  27791709 ttgaatctagaacttgctgatgtgttagcacaaattcgggatggtgaaaagcag 27791656  T

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