View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_5 (Length: 615)
Name: NF11446_high_5
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 15 - 611
Target Start/End: Original strand, 7669422 - 7670027
Alignment:
| Q |
15 |
aataatttcatgtgagcacaacaatcttaccagggcttagaccaagatataaactatatgtagaagtcgccctttctctcttgataaaacactgaattgg |
114 |
Q |
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| T |
7669422 |
aataatttcatgtgagcacaacaatcttaccagggcttagaccaagatataaactatatgtagaagtcgccctttctctcttgataaaacactgaattgg |
7669521 |
T |
|
| Q |
115 |
attgtctcttggacaaggctgaaaaacaaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagcttgaaacaaaaatgtca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7669522 |
attgtctcttggacaaggctgaaaaacaaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagcttgaaacaaaaatgtca |
7669621 |
T |
|
| Q |
215 |
tcaaattaaatgcataaagataaagaaaaaattacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttg |
314 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7669622 |
tcaaattaaatacataaagataaagaaaaaattacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttg |
7669721 |
T |
|
| Q |
315 |
ttatgtctctccataatctacaaactgaggcacaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaa |
414 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7669722 |
ttatgtctctccacaatctacaaactgaggcacaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaa |
7669821 |
T |
|
| Q |
415 |
tagtaactcaggaggtaagttagcccattgactctgaa---------gatgatgatgataatgatggtgttgttggtgctgatagtgatattggtgatga |
505 |
Q |
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| T |
7669822 |
tagtaactcaggaggtaagttagcccattgactctgaagatgatgatgatgatgatgatgatgatggtgttgttggtgctgatagtgatattggtgagga |
7669921 |
T |
|
| Q |
506 |
acattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctacatctcttctatacatgttgccaattccctctttcatctccttcatc |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
7669922 |
acattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctacatctcttatatacatgttgccaattccctctttcatctccttgatc |
7670021 |
T |
|
| Q |
606 |
tctctc |
611 |
Q |
| |
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|||||| |
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| T |
7670022 |
tctctc |
7670027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Original strand, 7089594 - 7090199
Alignment:
| Q |
17 |
taatttcatgtgagcacaacaatcttaccagggcttagaccaagatataaactatatgtagaagtcgccctttctctcttgataaaacactgaattggat |
116 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
7089594 |
taatttcatgtgagcactacaatcttaccagggcttagaccaagatataaactatatgtagaagtagccctttccctcttaataaaacactgaattggat |
7089693 |
T |
|
| Q |
117 |
tgtctcttggacaaggctgaaaaacaaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagcttgaaacaaaaatgtcatc |
216 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
7089694 |
tgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagcttaaaacaaaaatgacatc |
7089793 |
T |
|
| Q |
217 |
aaattaaatgcataaagata----aagaaaaaattacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctt |
312 |
Q |
| |
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|||| |||| |||||| | | || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089794 |
aaatcaaatacataaataaagtgaaaaaaaaaattacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctt |
7089893 |
T |
|
| Q |
313 |
tgttatgtctctccataatctacaaactgaggcacaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089894 |
tgttatgtctctccataatctacaaactgaggcacaagctacaagtgcacggcgagatggccaagaggtttcactagcttccaccctttgaattatgtct |
7089993 |
T |
|
| Q |
413 |
aatagtaactcaggaggtaagttagcccattgactc--tgaagatgatgatgat---------------aatgatggtgttgttggtgctgatagtgata |
495 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
7089994 |
aatagtaactcgggaggtaaattagcccattgactctgtgatgatgatgatgatgatgatgatgacagcgatgatggtgttgttggtactgatagtgata |
7090093 |
T |
|
| Q |
496 |
ttggtgatgaacattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctacatctcttctatacatgttgccaattccctctttcat |
595 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7090094 |
ttggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctatacatgttgccaattccctctttcat |
7090193 |
T |
|
| Q |
596 |
ctcctt |
601 |
Q |
| |
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|||||| |
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|
| T |
7090194 |
ctcctt |
7090199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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