View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_55 (Length: 251)
Name: NF11446_high_55
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_55 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 43522685 - 43522447
Alignment:
| Q |
13 |
atgaaacatggtagtgtttaaggtgggtgttaatttgatgttaatatttcaactttgatgattgatcacctcatgacataatggaagtcaggacaagcta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43522685 |
atgaaacatggtagtgtttaaggtgggtgttaatttcatgttaatatttcaactttgatgattgatcacctcatgacataatggaagtcagaacaagcta |
43522586 |
T |
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| Q |
113 |
gagtatctatattctcttgtactcattctctcaataaattagttttttgctggaaaaaatgataggaagtgggacattctaattctagatgtttccatca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43522585 |
gagtatctatattctcttgtactcattctctcaataaattagttttttgctggaaaaaatgataggaagtgggacattctaattctagatgtttccatca |
43522486 |
T |
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| Q |
213 |
tttatttatatattaaaaaatactaataagcatctctga |
251 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |
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| T |
43522485 |
tttatttatatattaaaaaatactaataagtatttctga |
43522447 |
T |
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