View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11446_high_56 (Length: 250)
Name: NF11446_high_56
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 54843706 - 54843464
Alignment:
| Q |
1 |
gtatacaatatgctacatgaggaccctggaaacgttagttactctgcagttggagggctttcagatcagattcgagaactcagggaatcaattgaactgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54843706 |
gtatacaatatgctacatgaggaccctggaaacgttagttactctgcagttggagggctttcagatcagattcgagaactcagggaatcaattgaactgc |
54843607 |
T |
|
| Q |
101 |
ctttaatgaatcctgaactttttcttagggttggaatcaaaccaccgaaggtaaggatatctcaaacacatttgtatgacttatttctagtgtttcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54843606 |
ctttaatgaatcctgaactttttcttagggttggaatcaaaccaccgaaggtaaggatatctcaaacacatttgtatgacttatttctagtgtttcatta |
54843507 |
T |
|
| Q |
201 |
aggaaaagaaactgaatttacttctcacagggtgttcatctct |
243 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54843506 |
atgaaaagaaactgaatttacttctcacagggtgttcttctct |
54843464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 52565999 - 52565927
Alignment:
| Q |
82 |
agggaatcaattgaactgcctttaatgaatcctgaactttttcttagggttggaatcaaaccaccgaaggtaa |
154 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| || |||||||| |||||||| ||||| || ||||||| |
|
|
| T |
52565999 |
agggaatcaattgaattacctctaatgaatcctgagctctttcttagagttggaattaaacctcccaaggtaa |
52565927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University