View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_high_59 (Length: 244)

Name: NF11446_high_59
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_high_59
NF11446_high_59
[»] chr8 (5 HSPs)
chr8 (1-224)||(33689152-33689375)
chr8 (2-64)||(5657976-5658038)
chr8 (2-64)||(31100726-31100788)
chr8 (166-224)||(23738697-23738755)
chr8 (2-49)||(14677876-14677922)
[»] chr6 (4 HSPs)
chr6 (3-126)||(30908172-30908295)
chr6 (121-224)||(4660153-4660256)
chr6 (2-64)||(10092703-10092765)
chr6 (2-64)||(33045285-33045347)
[»] chr5 (4 HSPs)
chr5 (3-126)||(19085180-19085303)
chr5 (2-64)||(7473343-7473405)
chr5 (2-64)||(9044007-9044069)
chr5 (5-64)||(30442404-30442463)
[»] chr1 (1 HSPs)
chr1 (3-126)||(50991102-50991224)
[»] scaffold0475 (1 HSPs)
scaffold0475 (121-224)||(7451-7554)
[»] chr7 (4 HSPs)
chr7 (1-72)||(26909838-26909909)
chr7 (2-64)||(43071236-43071298)
chr7 (4-64)||(1262293-1262353)
chr7 (4-49)||(48849663-48849708)
[»] chr3 (4 HSPs)
chr3 (2-64)||(31685282-31685344)
chr3 (2-64)||(53973140-53973202)
chr3 (2-64)||(37982557-37982619)
chr3 (2-64)||(19881965-19882027)
[»] scaffold0045 (1 HSPs)
scaffold0045 (2-70)||(11488-11556)
[»] chr2 (4 HSPs)
chr2 (2-64)||(10328751-10328813)
chr2 (2-64)||(12741893-12741955)
chr2 (2-64)||(18355167-18355229)
chr2 (2-64)||(23348834-23348896)
[»] chr4 (2 HSPs)
chr4 (4-64)||(29863217-29863277)
chr4 (166-224)||(24260260-24260318)
[»] scaffold0596 (1 HSPs)
scaffold0596 (2-49)||(874-921)
[»] scaffold0035 (1 HSPs)
scaffold0035 (2-64)||(35268-35330)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33689152 - 33689375
Alignment:
Q  1 gttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggaggaaaatgagtttcaaagaagcccggagagaaaataaag 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||   |||||||||||||    
T  33689152 gttaacaatgaaggagaaagaggtgggtatggataagtgtggagtcaatatggaaattggaggaaaatgagtttcaaagaagccaacagagaaaataaag 33689251  T
Q  101 ctttggaaaatgctagcaataatgaggcgtgactttttgcattggaagtgtatcgcaatgttcaagatccatccaatggccacaatgaatcgaagccaaa 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  33689252 ctttggaaaatgctagcaataatgaggcgcgactttttgcattggaagtgtatctcaatgttaaagatccatccaatggccacaatgaatcggagccaaa 33689351  T
Q  201 aactttagggttaggatttgcaaa 224  Q
    ||||||| ||||||| | ||||||    
T  33689352 aactttaaggttagggtctgcaaa 33689375  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 5658038 - 5657976
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||| || |||||||||||||||||| ||  ||||||||||    
T  5658038 ttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttgggaattggagga 5657976  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 31100726 - 31100788
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||| || |||||||||||||||||| ||  ||||||||||    
T  31100726 ttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttgggaattggagga 31100788  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 23738755 - 23738697
Alignment:
Q  166 gatccatccaatggccacaatgaatcgaagccaaaaactttagggttaggatttgcaaa 224  Q
    ||||||||||||||| | ||||||| | |||||||||||||||||||||| ||||||||    
T  23738755 gatccatccaatggctagaatgaattggagccaaaaactttagggttagggtttgcaaa 23738697  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 14677876 - 14677922
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaat 49  Q
    |||||||||||||||||||||||||  || ||||||||||||||||||    
T  14677876 ttaaaaatgaaggagaaagaggtggacat-gataagtgtggagtcaat 14677922  T

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Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 30908172 - 30908295
Alignment:
Q  3 taaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggaggaaaatgagtttcaaagaagcccggagagaaaataaagct 102  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||   ||||||||||||||     
T  30908172 taaaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgagaattggaggaaaatgagtttcaaagaagccaatagagaaaataaagcg 30908271  T
Q  103 ttggaaaatgctagcaataatgag 126  Q
    ||||||||||||||||||||||||    
T  30908272 ttggaaaatgctagcaataatgag 30908295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 4660153 - 4660256
Alignment:
Q  121 aatgaggcgtgactttttgcattggaagtgtatcgcaatgttcaagatccatccaatggccacaatgaatcgaagccaaaaactttagggttaggatttg 220  Q
    ||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||| || ||||||| | |||||||||||||||||||||| ||||    
T  4660153 aatgaggcgcgactttttgcattggaagtgtatctcaaggttaaagatccatccaatgggcagaatgaattggagccaaaaactttagggttagggtttg 4660252  T
Q  221 caaa 224  Q
    ||||    
T  4660253 caaa 4660256  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 10092765 - 10092703
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| || |||||||||||    
T  10092765 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttggaaattggagga 10092703  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 33045285 - 33045347
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  33045285 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 33045347  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 19085180 - 19085303
Alignment:
Q  3 taaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggaggaaaatgagtttcaaagaagcccggagagaaaataaagct 102  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||   ||||||||||||||     
T  19085180 taaaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgggaattggaggaaaatgagtttcaaagaagccaatagagaaaataaagcg 19085279  T
Q  103 ttggaaaatgctagcaataatgag 126  Q
    ||||||||||||||||||||||||    
T  19085280 ttggaaaatgctagcaataatgag 19085303  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 7473343 - 7473405
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  7473343 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 7473405  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 9044069 - 9044007
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  9044069 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 9044007  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 30442404 - 30442463
Alignment:
Q  5 aaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    ||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  30442404 aaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 30442463  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 50991224 - 50991102
Alignment:
Q  3 taaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggaggaaaatgagtttcaaagaagcccggagagaaaataaagct 102  Q
    |||||||| ||||||||||||||| ||| || ||||||||||||||| ||  ||||||||||| ||||||||||||||||||   |||||||||||||      
T  50991224 taaaaatggaggagaaagaggtgg-tatcgaaaagtgtggagtcaatatgggaattggaggaagatgagtttcaaagaagccaaaagagaaaataaagtg 50991126  T
Q  103 ttggaaaatgctagcaataatgag 126  Q
    ||||||||||||||||||||||||    
T  50991125 ttggaaaatgctagcaataatgag 50991102  T

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Target: scaffold0475 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 7451 - 7554
Alignment:
Q  121 aatgaggcgtgactttttgcattggaagtgtatcgcaatgttcaagatccatccaatggccacaatgaatcgaagccaaaaactttagggttaggatttg 220  Q
    ||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||| |||| || ||||||| | |||||||||||||||||||||| ||||    
T  7451 aatgaggcgcgactttttgcattggaagtgtatctcaaggttaaagatccatccgatgggcagaatgaattggagccaaaaactttagggttagggtttg 7550  T
Q  221 caaa 224  Q
    ||||    
T  7551 caaa 7554  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26909838 - 26909909
Alignment:
Q  1 gttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggaggaaaatgagt 72  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||||||||| |||||||    
T  26909838 gttaaaaatgaaggagaaaaaggtgggcatggataagtgtggagtcaatctgggaattggaggataatgagt 26909909  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 43071236 - 43071298
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  43071236 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 43071298  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 1262353 - 1262293
Alignment:
Q  4 aaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    ||||||||||||||||||||||   || |||||||||||||||||| ||  ||||||||||    
T  1262353 aaaaatgaaggagaaagaggtgaacatcgataagtgtggagtcaatttgggaattggagga 1262293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 48849663 - 48849708
Alignment:
Q  4 aaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaat 49  Q
    ||||||||||||||||||||||   || ||||||||||||||||||    
T  48849663 aaaaatgaaggagaaagaggtgaacatcgataagtgtggagtcaat 48849708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 31685344 - 31685282
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||| ||||||||||    
T  31685344 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgagaattggagga 31685282  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 53973140 - 53973202
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||| ||||||||||    
T  53973140 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgagaattggagga 53973202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 37982619 - 37982557
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  37982619 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 37982557  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 19881965 - 19882027
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || ||||| |||||||||||| ||  ||||||||||    
T  19881965 ttaaaaatgaaggagaaagaggtggacatcgataaatgtggagtcaatttgggaattggagga 19882027  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 11488 - 11556
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggaggaaaatga 70  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||| ||  |||||||||| |||||    
T  11488 ttaaaaatgaaggagaaagaggtgggcatcaataagtgtggagtcaatttgggaattggaggataatga 11556  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 10328751 - 10328813
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  10328751 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 10328813  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 12741955 - 12741893
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  12741955 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 12741893  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 18355167 - 18355229
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  18355167 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 18355229  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 23348834 - 23348896
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  23348834 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 23348896  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 29863217 - 29863277
Alignment:
Q  4 aaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||||||||  || |||||||||||||||||| ||  ||||||||||    
T  29863217 aaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggagga 29863277  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 24260318 - 24260260
Alignment:
Q  166 gatccatccaatggccacaatgaatcgaagccaaaaactttagggttaggatttgcaaa 224  Q
    |||| |||||||| ||| ||||||| | |||||||||||||||||||||| ||||||||    
T  24260318 gatcaatccaatgcccaaaatgaattggagccaaaaactttagggttagggtttgcaaa 24260260  T

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Target: scaffold0596 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 921 - 874
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaat 49  Q
    |||||||||||||||||||||||||  || ||||||||||||||||||    
T  921 ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaat 874  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 35330 - 35268
Alignment:
Q  2 ttaaaaatgaaggagaaagaggtgggtatggataagtgtggagtcaatctgaaaattggagga 64  Q
    |||||||||||||||||| ||||||  || |||||||||||||| ||| ||  ||||||||||    
T  35330 ttaaaaatgaaggagaaaaaggtggacatcgataagtgtggagttaatttgggaattggagga 35268  T

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