View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_60 (Length: 244)
Name: NF11446_high_60
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 4163653 - 4163750
Alignment:
| Q |
130 |
tcacacaatcaacttggcagaatggaccagatgaatgtgagctaaattctttggcagcatgtgccctcaatatttggcctattgtggtaagtataaag |
227 |
Q |
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| T |
4163653 |
tcacacaatcaacttggcagaatggaccagatgaatgtgagctaaattctttggcagcatgtgccctcaatatttggcctaatgtggtaagtataaag |
4163750 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 4163543 - 4163589
Alignment:
| Q |
21 |
ggccaattctcatgtcaatcaaaccaacaatgccatttcatgccagg |
67 |
Q |
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| T |
4163543 |
ggccaattctcatgtcaatcaaaccaacaatgccatttcatgtcagg |
4163589 |
T |
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