View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_high_62 (Length: 239)

Name: NF11446_high_62
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_high_62
NF11446_high_62
[»] chr6 (18 HSPs)
chr6 (18-197)||(5100681-5100860)
chr6 (18-197)||(5135782-5135961)
chr6 (20-188)||(5351662-5351822)
chr6 (49-147)||(5398379-5398477)
chr6 (59-133)||(5255976-5256050)
chr6 (49-157)||(5242332-5242438)
chr6 (67-142)||(5439361-5439436)
chr6 (59-148)||(5180636-5180725)
chr6 (67-147)||(5352700-5352780)
chr6 (59-136)||(5448965-5449042)
chr6 (59-111)||(5283101-5283153)
chr6 (49-127)||(5334453-5334532)
chr6 (60-148)||(5155843-5155931)
chr6 (151-197)||(5098464-5098510)
chr6 (149-197)||(5242506-5242554)
chr6 (196-239)||(5075832-5075875)
chr6 (149-194)||(5156007-5156052)
chr6 (149-194)||(5372353-5372398)
[»] chr3 (4 HSPs)
chr3 (60-135)||(47985223-47985298)
chr3 (60-135)||(47994510-47994585)
chr3 (60-135)||(48003797-48003872)
chr3 (60-135)||(48013082-48013157)
[»] chr4 (4 HSPs)
chr4 (196-239)||(25567861-25567904)
chr4 (151-197)||(25569096-25569142)
chr4 (149-197)||(4132612-4132660)
chr4 (149-197)||(4319296-4319344)
[»] scaffold1476 (1 HSPs)
scaffold1476 (25-90)||(163-228)
[»] chr2 (1 HSPs)
chr2 (49-94)||(22583235-22583280)
[»] scaffold0294 (1 HSPs)
scaffold0294 (94-146)||(7741-7793)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 5100681 - 5100860
Alignment:
Q  18 atcataaaattgatttttgctcggacatcgctttactatcattcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgg 117  Q
    |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100681 atcataaaattgatttttgctcggccattgcattactatctttcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgg 5100780  T
Q  118 gctcctcttcagtagagaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttcacattgaaactg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5100781 gctcctcttcagtagagaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttcacaatgaaactg 5100860  T

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Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 5135782 - 5135961
Alignment:
Q  18 atcataaaattgatttttgctcggacatcgctttactatcattcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgg 117  Q
    |||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5135782 atcataaaattgatttttgctcggccattgctttactatcttccattgattcattccactcggtttttcttctttctgttctgattgaagtcatcattgg 5135881  T
Q  118 gctcctcttcagtagagaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttcacattgaaactg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5135882 gctcctcttcagtagagaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttcacaatgaaactg 5135961  T

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Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 5351822 - 5351662
Alignment:
Q  20 cataaaattgatttttgctcggacatcgctttactatcattcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggc 119  Q
    |||||||||||||||||||| | ||| ||||||||||| |||| |        |||||| |||||||||||||||||||||||| | |||||||||||||    
T  5351822 cataaaattgatttttgctccgccattgctttactatctttcaat--------ccactcagtttttcttctttctgttctgattaaggtcatcagtgggc 5351731  T
Q  120 tcctcttcagtagagaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttcaca 188  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  5351730 tcctcttcagtagagaatctcttgacagatggttcatcatatacgagataaactactgtctttttcaca 5351662  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 5398477 - 5398379
Alignment:
Q  49 tttactatcattcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacag 147  Q
    ||||| ||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5398477 tttaccatctttcattgattcattcaactcggcttttcttctttcttttctgattgaagtcatcagtgggctcatcttcagtagagaatctcttgacag 5398379  T

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Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 5255976 - 5256050
Alignment:
Q  59 ttcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtaga 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5255976 ttcattgattcattccactcggtttttcttctttctgttctgattgaaatcatcagtgggctcctcttcagtaga 5256050  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 5242332 - 5242438
Alignment:
Q  49 tttactatcattcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacaga 148  Q
    ||||| ||| ||||||||| ||||||||||| ||||||||  ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  5242332 tttaccatctttcattgatacattccactcgatttttctt--ttccgttctgattgaagtcatcagcaggctcctcttcagtagagaatctcttgacaga 5242429  T
Q  149 tggttcatc 157  Q
      |||||||    
T  5242430 gcgttcatc 5242438  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 5439436 - 5439361
Alignment:
Q  67 ttcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctctt 142  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  5439436 ttcattccattcgatttttcttctttctgttccgattgaagtcatcagtgggctcctctccagtagagaatctctt 5439361  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 5180636 - 5180725
Alignment:
Q  59 ttcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacaga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | || ||||||| |||||||||||| |||||    
T  5180636 ttcattgattcattccactcggtttttcttctttctgttctgattgaagtcgtcggcgtgttcgtcttcagcagagaatctcttcacaga 5180725  T

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Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 5352700 - 5352780
Alignment:
Q  67 ttcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacag 147  Q
    ||||||||| ||| |||||||||||||||||||||||||  || |||||| ||||||||||| ||||||||||||||||||    
T  5352700 ttcattccattcgatttttcttctttctgttctgattgacatcttcagtgtgctcctcttcaatagagaatctcttgacag 5352780  T

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Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 5449042 - 5448965
Alignment:
Q  59 ttcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaa 136  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||| || ||||||||||||||    
T  5449042 ttcattgattcattctacttgatttttcttctttctgttctgattgaagtcatctgcgggatcgtcttcagtagagaa 5448965  T

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Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 5283101 - 5283153
Alignment:
Q  59 ttcattgattcattccactcggtttttcttctttctgttctgattgaagtcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5283101 ttcattgattcattccactcggtttttcttctttctgttctgagtgaagtcat 5283153  T

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Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 5334532 - 5334453
Alignment:
Q  49 tttactatcattcattgattcattccactc-ggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttc 127  Q
    ||||| ||| ||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| |||||    
T  5334532 tttaccatctttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 5334453  T

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Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 5155843 - 5155931
Alignment:
Q  60 tcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacaga 148  Q
    |||||||||||||||||  ||  ||||||||||||||| |||||| |||||||| |||| ||| |||||| ||  ||||||||||||||    
T  5155843 tcattgattcattccacctggcctttcttctttctgttttgattgcagtcatcaatgggatccccttcagaagctaatctcttgacaga 5155931  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 5098510 - 5098464
Alignment:
Q  151 gttcatcgtatacgagataaactgctgtctttttcacattgaaactg 197  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  5098510 gttcatcatataccagataaactgctgtctttttcacaatgaaactg 5098464  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 5242506 - 5242554
Alignment:
Q  149 tggttcatcgtatacgagataaactgctgtctttttcacattgaaactg 197  Q
    ||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
T  5242506 tggttcatcatatacgagataaactactgtcttcttcacaatgaaactg 5242554  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 5075875 - 5075832
Alignment:
Q  196 tggggtatgggagggattggaaaaaccactattgcaaaagccat 239  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||    
T  5075875 tggggtatgggtgggattggtaaaaccaccattgcaaaagccat 5075832  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 5156007 - 5156052
Alignment:
Q  149 tggttcatcgtatacgagataaactgctgtctttttcacattgaaa 194  Q
    ||||||||||||||| |||||||||| |||||| |||||| |||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaa 5156052  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 5372398 - 5372353
Alignment:
Q  149 tggttcatcgtatacgagataaactgctgtctttttcacattgaaa 194  Q
    ||||||||||||||||||||||| || |||||| |||||| |||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaa 5372353  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 47985223 - 47985298
Alignment:
Q  60 tcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 135  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  47985223 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47985298  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 47994510 - 47994585
Alignment:
Q  60 tcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 135  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  47994510 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47994585  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 48003797 - 48003872
Alignment:
Q  60 tcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 135  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  48003797 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48003872  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 48013082 - 48013157
Alignment:
Q  60 tcattgattcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagaga 135  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||  ||| |||||||||||||||||    
T  48013082 tcattgattcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48013157  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 25567861 - 25567904
Alignment:
Q  196 tggggtatgggagggattggaaaaaccactattgcaaaagccat 239  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  25567861 tggggtatgggagggattggcaaaaccaccattgcaaaagccat 25567904  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 25569142 - 25569096
Alignment:
Q  151 gttcatcgtatacgagataaactgctgtctttttcacattgaaactg 197  Q
    |||||||||||||||||||||||| ||| || ||||| |||||||||    
T  25569142 gttcatcgtatacgagataaactgttgtattcttcactttgaaactg 25569096  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 4132612 - 4132660
Alignment:
Q  149 tggttcatcgtatacgagataaactgctgtctttttcacattgaaactg 197  Q
    ||||||||| |||| ||||||||||||||||||  ||||| ||||||||    
T  4132612 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactg 4132660  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 4319296 - 4319344
Alignment:
Q  149 tggttcatcgtatacgagataaactgctgtctttttcacattgaaactg 197  Q
    ||||||||| |||| ||||||||||||||||||  ||||| ||||||||    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactg 4319344  T

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Target: scaffold1476 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 228 - 163
Alignment:
Q  25 aattgatttttgctcggacatcgctttactatcattcattgattcattccactcggtttttcttct 90  Q
    ||||||||||||||| | ||| | ||||| ||| |||||||||||| |||||||| ||||||||||    
T  228 aattgatttttgctccgccattgttttaccatctttcattgattcactccactcgttttttcttct 163  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 22583235 - 22583280
Alignment:
Q  49 tttactatcattcattgattcattccactcggtttttcttctttct 94  Q
    ||||| ||| |||||||||||| |||||||| ||||||||||||||    
T  22583235 tttaccatctttcattgattcactccactcgatttttcttctttct 22583280  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 7741 - 7793
Alignment:
Q  94 tgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgaca 146  Q
    |||||||||||||| | |||||||||||||||| |||| |||  |||||||||    
T  7741 tgttctgattgaagccttcagtgggctcctcttgagtacagatactcttgaca 7793  T

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