View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_high_63 (Length: 237)

Name: NF11446_high_63
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_high_63
NF11446_high_63
[»] chr5 (3 HSPs)
chr5 (1-222)||(20732719-20732939)
chr5 (36-98)||(38545502-38545564)
chr5 (73-109)||(5187158-5187194)
[»] chr7 (6 HSPs)
chr7 (1-95)||(38722992-38723086)
chr7 (5-94)||(9154297-9154386)
chr7 (5-94)||(45782021-45782110)
chr7 (1-96)||(45782212-45782307)
chr7 (36-97)||(24730979-24731040)
chr7 (38-96)||(1920931-1920989)
[»] chr4 (9 HSPs)
chr4 (36-91)||(47645441-47645496)
chr4 (5-92)||(14612138-14612225)
chr4 (3-95)||(14784749-14784841)
chr4 (38-106)||(38229304-38229372)
chr4 (46-96)||(40259802-40259852)
chr4 (36-93)||(32335847-32335904)
chr4 (73-106)||(42369546-42369579)
chr4 (36-96)||(32336072-32336132)
chr4 (44-92)||(33978756-33978804)
[»] scaffold0005 (2 HSPs)
scaffold0005 (5-99)||(205152-205246)
scaffold0005 (3-95)||(54889-54981)
[»] chr2 (6 HSPs)
chr2 (5-93)||(25547799-25547887)
chr2 (4-95)||(35844739-35844830)
chr2 (4-95)||(35935367-35935458)
chr2 (37-96)||(9775386-9775445)
chr2 (38-95)||(19194073-19194130)
chr2 (46-94)||(35844947-35844995)
[»] chr6 (1 HSPs)
chr6 (38-97)||(655523-655582)
[»] chr3 (2 HSPs)
chr3 (5-95)||(2683165-2683255)
chr3 (47-96)||(2682968-2683017)
[»] scaffold0084 (1 HSPs)
scaffold0084 (36-99)||(4511-4574)
[»] scaffold0010 (1 HSPs)
scaffold0010 (36-95)||(128350-128409)
[»] chr8 (2 HSPs)
chr8 (43-94)||(30199617-30199668)
chr8 (36-91)||(32731306-32731361)
[»] scaffold0210 (2 HSPs)
scaffold0210 (38-95)||(20209-20266)
scaffold0210 (38-95)||(28101-28158)
[»] scaffold0169 (1 HSPs)
scaffold0169 (38-99)||(24997-25058)
[»] chr1 (1 HSPs)
chr1 (47-91)||(24749754-24749797)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20732719 - 20732939
Alignment:
Q  1 tggcaaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaaaac 100  Q
    ||||||||||||||||| |||||||||        |||||| |||||||||||||||||| | |||||||| || | ||||||||||||||||| ||||     
T  20732719 tggcaaaattagggggtcaaaattgcattttttt-gttagggggccaaaattgctacgatggtaaacatagggggctaaaagagcatttaagcccaaaat 20732817  T
Q  101 aaattaagtgatgttaatatcagtcatgttcgacttagacaacaaggaagtaaacaaaggaaaataaaatgcttttgtagccgattcttggattcaatgg 200  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20732818 aaatgaagtgatgttaatatcagtcatgttcagcttagacaacaaggaagaaaacaaaggaaaataaaatgcttttgtagccgattcttggattcaatgg 20732917  T
Q  201 acacgagatgaatggttccatt 222  Q
    ||||||||||||||||||||||    
T  20732918 acacgagatgaatggttccatt 20732939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 38545502 - 38545564
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaaa 98  Q
    |||||| ||| |||||||||||| | ||||||||||||| |||||||  ||||||||||||||    
T  38545502 gttagggggctaaaattgctacggtggcaaacatagagggccaaaagtacatttaagcctaaa 38545564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 5187158 - 5187194
Alignment:
Q  73 ggaccaaaagagcatttaagcctaaaacaaattaagt 109  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5187158 ggaccaaaagagcatttaagcctaaaaaaaattaagt 5187194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38722992 - 38723086
Alignment:
Q  1 tggcaaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    ||||||||||||||||| |||||||||        |||||| |||||||| ||||||||| |||||||||| || ||||||| ||||||||||||    
T  38722992 tggcaaaattagggggtcaaaattgcattttttttgttagggggccaaaactgctacgatggcaaacataggggtccaaaagtgcatttaagcct 38723086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 9154386 - 9154297
Alignment:
Q  5 aaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcc 94  Q
    |||||||||||||||||||||||        |||| | |||||||||||||||||| |||||||||||||  |||||| |||||||||||    
T  9154386 aaaattagggggttaaaattgcattgtttttgttatggggccaaaattgctacgatggcaaacatagagggtcaaaagtgcatttaagcc 9154297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 45782110 - 45782021
Alignment:
Q  5 aaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcc 94  Q
    ||||||||||||| |||||||||        |||||| |||||||||||||||| | |||||||||| |||||||||| |||||||||||    
T  45782110 aaaattagggggtcaaaattgcattgtttttgttagggggccaaaattgctacggtggcaaacataggggaccaaaagtgcatttaagcc 45782021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 45782212 - 45782307
Alignment:
Q  1 tggcaaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagccta 96  Q
    ||||||||||| ||||| |||||||||        |||||| || ||||||| ||||  ||||||||||||||||||||||| |||||||| ||||    
T  45782212 tggcaaaattaaggggtcaaaattgcatttcttttgttaggggggcaaaattactacagtagcaaacatagaggaccaaaagtgcatttaaaccta 45782307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 24730979 - 24731040
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaa 97  Q
    |||||| |||||||||||||||| |  ||||||||| ||||||||||  |||||||||||||    
T  24730979 gttagggggccaaaattgctacggtgacaaacataggggaccaaaagtacatttaagcctaa 24731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 1920989 - 1920931
Alignment:
Q  38 taggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagccta 96  Q
    |||| ||||||||||| |||||| |||||||||| || ||||||| || ||||||||||    
T  1920989 tagggggccaaaattgttacgatggcaaacatagggggccaaaagtgcgtttaagccta 1920931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 47645496 - 47645441
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaa 91  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||    
T  47645496 gttaggaggccaaaattgctacgatggcaaacataggggaccaaaagtacatttaa 47645441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 14612225 - 14612138
Alignment:
Q  5 aaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaag 92  Q
    ||||||||||||| |||||||||        |||||| || ||||||||||||||   |||||||||||||||||||| |||||||||    
T  14612225 aaaattagggggtcaaaattgcattgtttttgttagggggtcaaaattgctacgacgacaaacatagaggaccaaaagtgcatttaag 14612138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 14784749 - 14784841
Alignment:
Q  3 gcaaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    ||||||||||||||||||||||| |        |||||  | |||||||||||||||| |||||| |||  ||||||||| ||||||||||||    
T  14784749 gcaaaattagggggttaaaattgtattttttttgttagaggtccaaaattgctacgatggcaaacttaggagaccaaaagcgcatttaagcct 14784841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 38229372 - 38229304
Alignment:
Q  38 taggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaaaacaaatta 106  Q
    |||||||| |||||| |||| ||||||||||||| ||  |||||| |||||||||||||| | ||||||    
T  38229372 taggaggctaaaatttctaccatagcaaacatagggggtcaaaagtgcatttaagcctaagaaaaatta 38229304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 40259802 - 40259852
Alignment:
Q  46 caaaattgctacgatagcaaacatagaggaccaaaagagcatttaagccta 96  Q
    ||||||| ||||||| |||||||||| || ||||||| |||||||||||||    
T  40259802 caaaattactacgatggcaaacatagggggccaaaagtgcatttaagccta 40259852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 32335904 - 32335847
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagc 93  Q
    |||||| ||| |||||||||||| | |||||||||| || ||||||| ||||||||||    
T  32335904 gttagggggctaaaattgctacggtggcaaacatagggggccaaaagtgcatttaagc 32335847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 42369546 - 42369579
Alignment:
Q  73 ggaccaaaagagcatttaagcctaaaacaaatta 106  Q
    ||||||||||||||||||||||||||| ||||||    
T  42369546 ggaccaaaagagcatttaagcctaaaaaaaatta 42369579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 32336072 - 32336132
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagccta 96  Q
    ||||||||| ||||||||||| | | |||||||||| || ||||||| |||||||| ||||    
T  32336072 gttaggaggtcaaaattgctatggtggcaaacatagggggccaaaagtgcatttaacccta 32336132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 33978804 - 33978756
Alignment:
Q  44 gccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaag 92  Q
    ||||||||||||||||| |||||||||  ||| |||||| |||||||||    
T  33978804 gccaaaattgctacgatggcaaacatatgggatcaaaagtgcatttaag 33978756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 205152 - 205246
Alignment:
Q  5 aaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaaaa 99  Q
    ||||||||||||| |||||||||        |||||| || ||||||||||||||   |||||||||||||||||||| ||||||||||| ||||    
T  205152 aaaattagggggtcaaaattgcattgtttttgttagggggtcaaaattgctacgacgacaaacatagaggaccaaaagtgcatttaagccaaaaa 205246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 54981 - 54889
Alignment:
Q  3 gcaaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    ||||||||||||||||||||||| |        |||||  | |||||||||||||||| |||||| |||  ||||||||| ||||||||||||    
T  54981 gcaaaattagggggttaaaattgtattttttttgttagaggtccaaaattgctacgatggcaaacttaggagaccaaaagcgcatttaagcct 54889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 25547887 - 25547799
Alignment:
Q  5 aaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagc 93  Q
    ||||||||||||| |||||||||        |||||| || ||||||||||||||  |||||||||||||| |||||| ||||||||||    
T  25547887 aaaattagggggtcaaaattgcattgtttttgttagggggtcaaaattgctacgacggcaaacatagaggatcaaaagtgcatttaagc 25547799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 35844830 - 35844739
Alignment:
Q  4 caaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    |||||||||||||| |||||||||        |||||| |||||||||||||||||| |||||||||| || ||||||   |||||||||||    
T  35844830 caaaattagggggtcaaaattgcattttttttgttagggggccaaaattgctacgatggcaaacatagggggccaaaacttcatttaagcct 35844739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 35935458 - 35935367
Alignment:
Q  4 caaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    ||||||||||||||| ||||||||        |||||| |||||||||||||||||  ||||| |||| || ||||||| ||||||||||||    
T  35935458 caaaattagggggtttaaattgcattttttttgttagggggccaaaattgctacgacggcaaatatagggggccaaaagtgcatttaagcct 35935367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 9775445 - 9775386
Alignment:
Q  37 ttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagccta 96  Q
    ||||| |||||||||||||||||  |||||||||| ||| |||||  |||||||||||||    
T  9775445 ttagggggccaaaattgctacgacggcaaacataggggatcaaaaatgcatttaagccta 9775386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 19194130 - 19194073
Alignment:
Q  38 taggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    |||| |||||||||||||||||   ||||||||| || ||||||| ||||||||||||    
T  19194130 tagggggccaaaattgctacgaagacaaacatagggggccaaaagtgcatttaagcct 19194073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 35844947 - 35844995
Alignment:
Q  46 caaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcc 94  Q
    ||||||||||||||  ||||||||||||| ||||||  |||||||||||    
T  35844947 caaaattgctacgaaggcaaacatagagggccaaaaatgcatttaagcc 35844995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 655582 - 655523
Alignment:
Q  38 taggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaa 97  Q
    |||| ||||||||||||||| || |||||||||| || ||||||| ||||||||||||||    
T  655582 tagggggccaaaattgctaccatggcaaacatagggggccaaaagtgcatttaagcctaa 655523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 2683165 - 2683255
Alignment:
Q  5 aaaattagggggttaaaattgcannnnnnnngttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    ||||||||||||| |||||||||        |||||| |||||||||||||||| | ||||| |||| || ||||||| ||||||||||||    
T  2683165 aaaattagggggtcaaaattgcattgtttttgttagggggccaaaattgctacggtggcaaatatagggggccaaaagtgcatttaagcct 2683255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2683017 - 2682968
Alignment:
Q  47 aaaattgctacgatagcaaacatagaggaccaaaagagcatttaagccta 96  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||||||    
T  2683017 aaaattactacagtagcaaacatagaggaccaaaagtgcatttaagccta 2682968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 4574 - 4511
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaaaa 99  Q
    |||||| || ||||||||||||||  |||||||||| |  ||||||| ||||||||||||||||    
T  4574 gttagggggtcaaaattgctacgacggcaaacatagcgagccaaaagtgcatttaagcctaaaa 4511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 128409 - 128350
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    |||||| ||||||||||| |||||  |||||||||| || ||||||| ||||||||||||    
T  128409 gttagggggccaaaattgatacgacggcaaacatagggggccaaaagtgcatttaagcct 128350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 30199617 - 30199668
Alignment:
Q  43 ggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcc 94  Q
    |||||||||||||||||  ||||||||| |||| |||||| |||||||||||    
T  30199617 ggccaaaattgctacgacggcaaacataaaggatcaaaagtgcatttaagcc 30199668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 32731361 - 32731306
Alignment:
Q  36 gttaggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaa 91  Q
    |||||||||||||||||| ||||||  ||||||||| || ||||||| ||||||||    
T  32731361 gttaggaggccaaaattgttacgatgtcaaacatagggggccaaaagtgcatttaa 32731306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 20209 - 20266
Alignment:
Q  38 taggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    |||| ||||||||||||||| || | |||||||| |||||||||| | ||||||||||    
T  20209 tagggggccaaaattgctaccatggaaaacataggggaccaaaagtggatttaagcct 20266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 28101 - 28158
Alignment:
Q  38 taggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcct 95  Q
    |||| ||||||||||||||| || | |||||||| |||||||||| | ||||||||||    
T  28101 tagggggccaaaattgctaccatggaaaacataggggaccaaaagtggatttaagcct 28158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 25058 - 24997
Alignment:
Q  38 taggaggccaaaattgctacgatagcaaacatagaggaccaaaagagcatttaagcctaaaa 99  Q
    |||||||||||||||||||||    ||||||||| || ||||||| |||||| |||||||||    
T  25058 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcattttagcctaaaa 24997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 24749754 - 24749797
Alignment:
Q  47 aaaattgctacgatagcaaacatagaggaccaaaagagcatttaa 91  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||    
T  24749754 aaaattgctacgatggcaaacatag-ggaccaaaagtgcatttaa 24749797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University