View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_high_64 (Length: 236)

Name: NF11446_high_64
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_high_64
NF11446_high_64
[»] chr6 (1 HSPs)
chr6 (16-217)||(30575188-30575390)
[»] scaffold0242 (3 HSPs)
scaffold0242 (170-217)||(9214-9261)
scaffold0242 (170-217)||(11518-11565)
scaffold0242 (171-217)||(6913-6959)
[»] chr8 (2 HSPs)
chr8 (170-217)||(30955329-30955376)
chr8 (170-217)||(30957982-30958029)
[»] chr7 (3 HSPs)
chr7 (170-217)||(40691983-40692030)
chr7 (171-217)||(40690018-40690064)
chr7 (171-201)||(41495699-41495729)
[»] chr3 (2 HSPs)
chr3 (170-217)||(19316512-19316559)
chr3 (170-217)||(19319227-19319274)
[»] chr2 (3 HSPs)
chr2 (171-217)||(19019863-19019909)
chr2 (171-217)||(3030133-3030179)
chr2 (171-217)||(4250827-4250873)
[»] chr1 (2 HSPs)
chr1 (171-217)||(21899356-21899402)
chr1 (171-217)||(44611787-44611833)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 30575390 - 30575188
Alignment:
Q  16 gacatcatgatttgattattctttgcttttgtggttcactaatccattggggtgtctcaatttgagggaatagtttggcagaaaa-gttgtatgactatt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30575390 gacaacatgatttgattattctttgcttttgtggttcactaatccattggggtgtctcaatttgagggaatagtttggcagaaaaagttgtatgactatt 30575291  T
Q  115 gatgtcattcaacatccagcaaatttatggtgctctaggcgtgctgagactgttcttgataggatctaatatgtacacataggcccacttagagggagag 214  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30575290 gatgtcattcaacatccagcgaatatatggtgctctaggcgtgcagagactgttcttgataggatctaatatgtacacataggcccacttagagggagag 30575191  T
Q  215 tta 217  Q
    |||    
T  30575190 tta 30575188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 9214 - 9261
Alignment:
Q  170 ttgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9214 ttgataggatctaatatgtacacataggcccacttagagggagagtta 9261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 11518 - 11565
Alignment:
Q  170 ttgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11518 ttgataggatctaatatgttcacataggcccacttagagggagagtta 11565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 6913 - 6959
Alignment:
Q  171 tgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6913 tgataggatctaatatgttcacataggcccacttagagggagagtta 6959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 30955376 - 30955329
Alignment:
Q  170 ttgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955376 ttgataggatctaatatgtacacataggcccacttagagggagagtta 30955329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 30958029 - 30957982
Alignment:
Q  170 ttgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30958029 ttgataggatctaatatgtacacataggcccacttagagggagagtta 30957982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 40691983 - 40692030
Alignment:
Q  170 ttgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40691983 ttgataggatctaatatgtacacataggcccacttagagggagagtta 40692030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 40690018 - 40690064
Alignment:
Q  171 tgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40690018 tgataggatctaatatgtacacataggcccacttagagggagagtta 40690064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 41495699 - 41495729
Alignment:
Q  171 tgataggatctaatatgtacacataggccca 201  Q
    |||||||||||||||||||||||||||||||    
T  41495699 tgataggatctaatatgtacacataggccca 41495729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 19316512 - 19316559
Alignment:
Q  170 ttgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19316512 ttgataggatctaatatgtacacataggcccacttagagggagagtta 19316559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 19319227 - 19319274
Alignment:
Q  170 ttgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19319227 ttgataggatctaatatgtacacataggctcacttagagggagagtta 19319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 19019909 - 19019863
Alignment:
Q  171 tgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19019909 tgataggatctaatatgtacacataggcccacttagagggagagtta 19019863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 3030179 - 3030133
Alignment:
Q  171 tgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  3030179 tgataggatctaatatgcacacataggcccacttagagggagagtta 3030133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 4250827 - 4250873
Alignment:
Q  171 tgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  4250827 tgataggatctaatatgtacacattggcccacttagagggagagtta 4250873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 21899356 - 21899402
Alignment:
Q  171 tgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21899356 tgataggatctaatatgtacacataggcccacttagagggagagtta 21899402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 44611787 - 44611833
Alignment:
Q  171 tgataggatctaatatgtacacataggcccacttagagggagagtta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44611787 tgataggatctaatatgtacacataggcccacttagagggagagtta 44611833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University