View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_65 (Length: 229)
Name: NF11446_high_65
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_65 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 52599940 - 52600147
Alignment:
| Q |
14 |
cacagaagcaaggtaatatgataaaacttcataaaaagtttaccacaaaatataaagtaaagtcaaattgtttttataaactttacttaagaattgatgg |
113 |
Q |
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| T |
52599940 |
cacagaagcaaggtaatatgataaaacttcataaaaagtttaccacaaaatataaagtaaagtcaaattgtttttataaactttacttaagaattgatgg |
52600039 |
T |
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| Q |
114 |
aaataaactgaaaacaac----------ttaaaaaactattttcataagctcttcagacttgcaagcgtttaagcagtggataaaaataaccatggttgt |
203 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52600040 |
aaataaactgaaaacaacttatggacgtttaaaaaactattttcataagctcttcagacttgcaagcgtttaagcagtggataaaaataaccatggttgt |
52600139 |
T |
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| Q |
204 |
gcttacat |
211 |
Q |
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|||||||| |
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| T |
52600140 |
gcttacat |
52600147 |
T |
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