View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_high_7 (Length: 564)
Name: NF11446_high_7
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 38187571 - 38188112
Alignment:
| Q |
18 |
aaggacctgctagcatgtgaacatcttgtcccttgtcaaatgcttcccgagcatagttgtttaattccttgagttccaaagcttgaccactatttctata |
117 |
Q |
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| T |
38187571 |
aaggacctgctagcatgtgaacatcttgtcccttgtcaaatgcttcccgagcattgttgtttaattccttgacttccaaagcttgaccactatttctata |
38187670 |
T |
|
| Q |
118 |
atggttatcaccctacagaacacaaacagattttaacccaaatacaagataagcatgcaagaagcaataacaaatcaaaccatcaagttccttnnnnnnn |
217 |
Q |
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| T |
38187671 |
atggttatcaccctacagaacacaaacagattttaacccaaatacaagataagcatgcaacaagcaataacaaatcaaaccatcaagttccttaaaaaaa |
38187770 |
T |
|
| Q |
218 |
ntaatccttaagactaagttaccaagtaaaacttttcatttggatctgactctggaagaggatcttcacgcatggacctagtcttggggtcataatgtgc |
317 |
Q |
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| T |
38187771 |
ataatccttaagactaagttaccaagtaaaacttttcatttggatctgactctggaagaggatcttcacgcatggacctagtcttggggtcataatgtgc |
38187870 |
T |
|
| Q |
318 |
agaattgacat------tgagaagatattttgcagtatcctctcggatacgtaggttcctgaagattaagatatttcagttacaatccacgtaagaaaaa |
411 |
Q |
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| T |
38187871 |
agaattgacatcgagattgagaagatattttgcagtatcctctcggatacgtaggttcctgaagattaagatatttcagttacaatccacgtaagaaaaa |
38187970 |
T |
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| Q |
412 |
taatagaagtgataattaccaatcaactctgctatgcacttttacaatgacagcatcataaaaattacctcacagttcctctactcccaccacctgttgt |
511 |
Q |
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| T |
38187971 |
taatagaagtgataattaccaatcaactctgctatgcacttttacaatgacagcatcataaaaattacctcacagttcctctactcccaccacctgttgt |
38188070 |
T |
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| Q |
512 |
acgcacacgcttctcaacctttgcgaagtccatttgtttcat |
553 |
Q |
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| T |
38188071 |
acgcacacgcttctcaacctttgcgaagtccatttgtttcat |
38188112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 30 - 550
Target Start/End: Complemental strand, 38923320 - 38922774
Alignment:
| Q |
30 |
gcatgtgaacatcttgtcccttgtcaaatgcttcccgagcatagttgtttaattccttgagttccaaagcttgaccactatttctataatggttatcacc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
38923320 |
gcatgtgaacatcttgtcccttgtcaaatgcttcccaggcatggatgtttaagtccttgaattccaaagcttgaccactacttctatattggttatcacc |
38923221 |
T |
|
| Q |
130 |
ctacag------aacacaaacagattttaacccaaatacaa-gataagcatgcaagaagcaataacaaatcaaaccatcaagttc-cttnnnnnnnntaa |
221 |
Q |
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| T |
38923220 |
ctacaagacaaaaacaaaaacaaattttaacccaaatacaaagattaacacgcaa-aagcaataaaaaatcaaatcatcaagttttctaaataaatttaa |
38923122 |
T |
|
| Q |
222 |
tccttaagactaagttaccaagtaaaacttttcatttggatctgactctggaagaggatcttcacgcatggacctagtcttggggtcataatgtgcagaa |
321 |
Q |
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| T |
38923121 |
tcttcgagac-agtttaccaagtaaaacttttcatttggatctgcctctggaagaggatcttcacgcatggacctggtcttggggtcataatgtgcagaa |
38923023 |
T |
|
| Q |
322 |
ttgac------attgagaagatattttgcagtatcctctcggatacgtaggttcctgaagattaag--atatttcagttacaatccacgtaagaaaaata |
413 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||| || ||||||||||| |
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| T |
38923022 |
ttgacatcaagattgagaagatattttgcagtatcctctcgaatacgtaggttcctgaaggttaagatatatttacattacaattcatgtaagaaaaatt |
38922923 |
T |
|
| Q |
414 |
atagaagtgataatt------------accaatcaactctgctatgcacttttacaatgacagcatcataaaaattacctcacagttcctctactcccac |
501 |
Q |
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|||||| |||||||| |||||| |||| || |||| | ||||||||| |||| |||||||||||||||||||||||| ||||||||| |
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| T |
38922922 |
atagaactgataattgtaatttaacggaccaataaacttggcgctgcattattacaatgagagcaacataaaaattacctcacagttcctgtactcccac |
38922823 |
T |
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| Q |
502 |
cacctgttgtacgcacacgcttctcaacctttgcgaagtccatttgttt |
550 |
Q |
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| T |
38922822 |
cacctgttgttcgcacacgcttctcaacctttgcaaaatccatctgttt |
38922774 |
T |
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