View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_10 (Length: 516)
Name: NF11446_low_10
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 38403030 - 38403519
Alignment:
| Q |
1 |
cattcatgattgaatactgaaaatcactctttacctgctctggagtaaaaatcactcccttctcataaaacgaatcataatttccaatctcaacctgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38403030 |
cattcatgattgaatactgaaaatcactctttacctgctctggagtaaaaatcactcccttctcataaaatgaatcataatttccaatctcaacctgcca |
38403129 |
T |
|
| Q |
101 |
atgccatataatgttaagaacaaatcttgtaaggatgaattttaaatgtttatggttatcccatcttttgactagaatatgaacttggaactgatactag |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38403130 |
atgccatataatattaagaacaaatcttgtaaggatgaattttaaatgtttatggttatcccatcttttgactagaatatgaacttggaactgatactag |
38403229 |
T |
|
| Q |
201 |
aaatggaactagacaaaaggtcaaaccattagtgctcctgcttcaactgcagctggaaatgttgcaggatctacagaagaaacacaaacctgcaacagcg |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38403230 |
aaatggaattagacaaaaggtcaaaccattagtgctcctgcttcaactgcagctggaaatgttgcaggatctacagaagaaacacaaacctgcaacagcg |
38403329 |
T |
|
| Q |
301 |
atgaatcataaattgttgcctcttttaagagtattgtaaatgtacattgaaattagaatcaatatgcatgttcaataccaactttataaatgattaagat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38403330 |
atgaatcataaattgttgcctcttttaagagtattgtaaatgtacattgaaattagaatcaatatgcatgttcaataccaactttataaatgattaagat |
38403429 |
T |
|
| Q |
401 |
atcctctgattatagtaaattttgtagatgcaaaggcatttttcatttcctctctgcttaagtctggaaaccatataaacgagagtgtta |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38403430 |
atcctctgattatagtaaattttgtagatgcaaaggcatttttcatttcctctctgcttaagtctggaaaccatataaacgagagtgtta |
38403519 |
T |
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