View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_11 (Length: 499)
Name: NF11446_low_11
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 23 - 475
Target Start/End: Complemental strand, 8459876 - 8459422
Alignment:
| Q |
23 |
caactgttagagtgaaatcttattcaacgatattatttctcaatcgtctagtttgagcaattttgagaccatttaaaattgtatgaagttcgatgcataa |
122 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
8459876 |
caactgttagagtgaaatcttattcaacgataatatttctcaattgtctagtttgagcaattttgagaccatttaaaattgcatgaagttcgacgcataa |
8459777 |
T |
|
| Q |
123 |
ggaattagagagcaagaacccaaataaccagtttccattgttgttgcgcaagatgccaccaaagccga---ttccatgatcgttgaaagagttgtcgtcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8459776 |
ggaattagagagcaagaacccaaataaccagtttccattgttgtt-cgcaagatgccaccaaagccacatcttccatgatcgttgaaagagttgtcgtcc |
8459678 |
T |
|
| Q |
220 |
atattaacttttatgttgtcttcaggaggaggaatccaactggcctcacacgtcggtttttgaatggtaggagtacctagaaccttcaaggaaaagagct |
319 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459677 |
atattaacttttatgttgtcttcaggaggaggaattcaactggcctcacacgtcggtttttgaatggtaggagtacctagaaccttcaaggaaaagagct |
8459578 |
T |
|
| Q |
320 |
atataagaatgaatgttgttaagtcactgcgagataattcatttacggttgttgaacaccatgccattcttaatctttcaaataacgcaacaaatgacta |
419 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8459577 |
atataagaatgaatgttgttaagtcactgcaagataattcatttacggttgttgaacaccatgccattcttaatctttcagataacgcaacaaatgacta |
8459478 |
T |
|
| Q |
420 |
taaacataatctcgttgaaagatgtagcatggtctacaaaccatagattcaaaacc |
475 |
Q |
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| T |
8459477 |
caaacataatctcgttgaaagatgtagcatggtctacaaaccatagattcaaaacc |
8459422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 475
Target Start/End: Complemental strand, 8464229 - 8464107
Alignment:
| Q |
351 |
agataattcatttacggttgttgaacaccatgccattcttaatctttcaaataacgcaacaaatgactataaacataatctcgttgaaagatgtagcatg |
450 |
Q |
| |
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||||||||||||||| || ||||||| ||||| ||||| || | || ||||| |||||| |||||||||||||||| ||||| |||||||||||||| |
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| T |
8464229 |
agataattcatttacagtcgttgaactccatgtcattcctagtgc--cagataacccaacaagtgactataaacataatatcgttaaaagatgtagcatg |
8464132 |
T |
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| Q |
451 |
gtctacaaaccatagattcaaaacc |
475 |
Q |
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||| | ||||||| ||||||||||| |
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| T |
8464131 |
gtcaaaaaaccatggattcaaaacc |
8464107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 309
Target Start/End: Complemental strand, 32513549 - 32513374
Alignment:
| Q |
137 |
agaacccaaataaccagtttccattgttgttgcgcaagatgccaccaaagcc-gat--tccatgatcgttgaaagagttgtcgtccatattaacttttat |
233 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| ||||||||| | |||||||| ||| | || | | |||||||||| | | |||| ||| ||||| || |
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| T |
32513549 |
agaacccaagtaactagtcgccattgttgttacgcaagatgtccccaaagcccgatctttcagggttgttgaaagagcttccatccacattcactttaat |
32513450 |
T |
|
| Q |
234 |
gttgtcttcaggaggaggaatccaactggcctcacacgtcggtttttgaatggtaggagtacctagaaccttcaag |
309 |
Q |
| |
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| |||||||| || || |||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||| |
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| T |
32513449 |
gatgtcttcaagaagatgaatccaagtaacctcacatgtcggtttttgaatggtaggagtacctagtacctgcaag |
32513374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 444
Target Start/End: Complemental strand, 23051616 - 23051309
Alignment:
| Q |
139 |
aacccaaataaccagtttccattgttgttgcgcaagatgccaccaaagcc-gat--tccatgatcgttgaaagagttgtcgtccatattaacttttatgt |
235 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||| |||||| ||| |||| ||| ||||||||| | | |||| |||||||||||| |
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| T |
23051616 |
aacccaagtaaccagacaccattgttgttgcgcaaaatgccatcaaagcttgatcttccaggattgttgaaagaacttccatccactttaacttttatgg |
23051517 |
T |
|
| Q |
236 |
tgtcttcaggaggaggaatccaactggcctcacacgtcggtttttgaatggtaggagtacctagaaccttcaaggaaaagagctatataagaatgaatgt |
335 |
Q |
| |
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| |||| |||||| | |||||| | |||||||| || |||||| ||| ||||||||| || |||| | |||||| | | ||||||||||||| | |
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| T |
23051516 |
tatctttcggaggatggatccaagagacctcacacatcagtttttaaattgtaggagtattaaggacctgct-ggaaaatggatctataagaatgaattt |
23051418 |
T |
|
| Q |
336 |
tgttaagtcactgcgagataattcatttacggttgttgaacaccatgccattcttaatctttcaaataacgcaacaaatgactataaacataatctcgtt |
435 |
Q |
| |
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| |||||||| || |||||||| |||||| || |||||||||| | |||| | ||| ||| ||||| |||||| ||||||||||||||||| |||| |
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| T |
23051417 |
tcttaagtcaatgtgagataatccatttagagtcattgaacaccaagtcatttcgagtctatcagataacccaacaagtgactataaacataatcccgtt |
23051318 |
T |
|
| Q |
436 |
gaaagatgt |
444 |
Q |
| |
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| ||||||| |
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| T |
23051317 |
ggaagatgt |
23051309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 381
Target Start/End: Complemental strand, 25316410 - 25316185
Alignment:
| Q |
159 |
attgttgttgcgcaagatgccaccaaagccga---ttccatgatcgttgaaagagttgtcgtccatattaacttttatgttgtcttcaggaggaggaatc |
255 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | ||||| ||| |||||||||| | |||| ||||||||| || |||||||| |||||| |||| |
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| T |
25316410 |
attgttgttgcccaagatgcccccaaagcctaattttccaggattgttgaaagagcttatatccacattaactttaattgtgtcttcaagaggagaaatc |
25316311 |
T |
|
| Q |
256 |
caactggcctcacacgtcggtttttgaatggtaggagtacctagaaccttcaaggaaaagagctatataag-aatgaatgttgttaagtcactgcgagat |
354 |
Q |
| |
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||| || |||||| |||||||||| |||| |||||||||||| || | ||| |||||| | |||||||| ||||||| || ||||| || | | |||| |
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| T |
25316310 |
caagtgatttcacacatcggtttttgtatggcaggagtacctaggacatgcaa-gaaaagggttatataagaaatgaatttttttaagacatttccagat |
25316212 |
T |
|
| Q |
355 |
aattcatttacggttgttgaacaccat |
381 |
Q |
| |
|
||| |||||| | |||||||||||| |
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|
| T |
25316211 |
aatctatttaccatcgttgaacaccat |
25316185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 52729327 - 52729422
Alignment:
| Q |
201 |
gttgaaagagttgtcgtccatattaacttttatgttgtcttcaggaggaggaatccaactggcctcacacgtcggtttttgaatggtaggagtacct |
297 |
Q |
| |
|
||||||||||||| | |||| |||||||| ||| || |||||||||||||||||||| |||| |||||| || ||||||| |||||| |||||||| |
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|
| T |
52729327 |
gttgaaagagttgacatccacattaactta-atggtgccttcaggaggaggaatccaagtggcttcacacatcagtttttggatggtaagagtacct |
52729422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 41616799 - 41616852
Alignment:
| Q |
409 |
acaaatgactataaacataatctcgttgaaagatgtagcatggtctacaaacca |
462 |
Q |
| |
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|||| |||||||||||||||||| ||||||| ||||| ||||||||||| |||| |
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|
| T |
41616799 |
acaagtgactataaacataatctagttgaaatatgtaacatggtctacagacca |
41616852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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