View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_12 (Length: 493)
Name: NF11446_low_12
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 5448407 - 5447932
Alignment:
| Q |
1 |
atgctcctcttttgctcttaggtttaaatccctcgggcgccaagaaattcttgtgttgggtaagttcatacaaaacattgttctaactttaactgggccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5448407 |
atgctcctcttttgctcttaggtttaaatccctcgggcgccaagaaattcttgtgttgggtaagttcatacaaaacattgttctaactttaactgggccc |
5448308 |
T |
|
| Q |
101 |
tcggctagtggaaggtgggattggtctcccggattggtcagtcttcaggtcaaatattgaattgtgcacnnnnnnnggcttatacataagttattatgct |
200 |
Q |
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| T |
5448307 |
tcggctagtggaaggtgggattggtctcccggattagtcagtcttcaggtcaaatattgaattgtgcacaaaaaaaggcttatacataagttattatgct |
5448208 |
T |
|
| Q |
201 |
ataggctgcatataagttgtttatccagccatgacttgtcttaattctatttgaagtaaacaatgttttcaatgacggatagggatggtcgcaagccaaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5448207 |
ataggctgcatataagttgtttatccaaccatgacttgtcttaattctatttgaagtaaacaatgttttcaatgacggatagggatggtcacaagccaaa |
5448108 |
T |
|
| Q |
301 |
aatgggcaagtgaaaggttttagaggaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5448107 |
aatgggcaagtgaaaggttttagaggaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaa |
5448008 |
T |
|
| Q |
401 |
tggagaaccataaggtgctgatggtaattgtcaatttgcaacattgatagttttggttttggtccctccttttccctttcat |
482 |
Q |
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| T |
5448007 |
tggagaaccataaggtgctgatggtaattgtcaatttgcaacattgatagttt------tggtccctccttttccctttcat |
5447932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 5456646 - 5456535
Alignment:
| Q |
326 |
gaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaatggagaaccataaggtgctgatggt |
425 |
Q |
| |
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||||||||||||| || | |||||| || |||||| || ||||||| |||||| |||||||||||||||||||||| ||||| ||||| | || ||||| |
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| T |
5456646 |
gaagcttggtaagacaattgaaaaatgaatatgatactaaaaagtagtaagcagagaaaacccacacaaacacaatgaagaactataagctcctaatggt |
5456547 |
T |
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| Q |
426 |
aattgtcaattt |
437 |
Q |
| |
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|||||||||||| |
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| T |
5456546 |
aattgtcaattt |
5456535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 5847486 - 5847528
Alignment:
| Q |
368 |
agtagaaagcagggaaaacccacacaaacacaatggagaacca |
410 |
Q |
| |
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| T |
5847486 |
agtagtaagcatggaaaacccacacaaacacaatggagaacca |
5847528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 43036564 - 43036515
Alignment:
| Q |
178 |
gcttatacataagttattatgctataggctgcatataagttgtttatcca |
227 |
Q |
| |
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|||||||||||||| |||||||||| || ||| |||||||||||||||| |
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| T |
43036564 |
gcttatacataagtggttatgctataagcggcaaataagttgtttatcca |
43036515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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