View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_13 (Length: 479)
Name: NF11446_low_13
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 249 - 464
Target Start/End: Original strand, 40076348 - 40076563
Alignment:
| Q |
249 |
cactttaaactcgagaggagactatcatatgaatcgagttatcgactataacatagccgtatggccctgccaaacaaattagccatagtaaatgacataa |
348 |
Q |
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| T |
40076348 |
cactttaaactcgagaggagactatcatatgaatcgagttatcgactataacatagccgtatggccctgccaaacaaattagccatagtaaatgacataa |
40076447 |
T |
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| Q |
349 |
atatagtaaattttgatgattatttttattaaattactcttctttaaccatatataaaagagaattatcgaaagttgactaagttgataagaagttaact |
448 |
Q |
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| T |
40076448 |
atatagtaaattttgatgattatttttattaaattactcttctttaaccatatataaaagagaattgtcgaaaattaactaagttgataagaagttaact |
40076547 |
T |
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| Q |
449 |
cgtcgtagatttaact |
464 |
Q |
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|||| ||||||||||| |
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| T |
40076548 |
cgtcttagatttaact |
40076563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 40076106 - 40076304
Alignment:
| Q |
11 |
atgaaaacattaatattttaagatgtgtgattatcgttgcgggctatttataatttgct-nnnnnnnttaagaatcaaagtgag-aaaaaatataacttg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
40076106 |
atgaaaacattaatattttaagatgtgtgattatcgttgcgggctatttataatttgctaaaaaaaattaagaatcaaagtgagaaaaaaatataacttg |
40076205 |
T |
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| Q |
109 |
gatgtgttatttgggcggtggcagaatcaatacgagg-nnnnnnnngtcatgaaacaatataagtcataaattcaaacattagttcaagtaaagactac |
206 |
Q |
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| T |
40076206 |
gatgtgttgtttgggcggtggcagaatcaatacgaggaaaaaaaaattcatgaaacaatataagtcataaattcaaacattagttcaagtaaagactac |
40076304 |
T |
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